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Pull requests: wwood/singlem
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feat(pipe): deduplicate read windows before DIAMOND blastx fallback
#303
opened Jun 26, 2026 by
SNH-star
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Warn about corrupted reads in DIAMOND output parser
codex
#302
opened Jun 16, 2026 by
wwood
Owner
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Sylph integration: graded absence weight, full-reconciliation mode, and strain-level brainstorm
#300
opened Jun 11, 2026 by
wwood
Owner
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Open packaged SQLite DBs in read-only immutable mode to avoid locking errors under SLURM
codex
#294
opened Mar 31, 2026 by
wwood
Owner
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Add tqdm progress bar for hmmsearch aggregation
codex
#279
opened Jan 8, 2026 by
wwood
Owner
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bug-fix: stop codons not registered when parsing alignments for metap…
#274
opened Dec 12, 2025 by
thepatientwait
Collaborator
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The updated code according to the developer's advice, to fit eukaryotic plastid screening
#272
opened Dec 9, 2025 by
Andyargueasae
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