Automated experimental workflow for carrying out the characterisation of recombinase-based parts and circuits.
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Updated
May 28, 2025 - Python
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recombinases
Here are 4 public repositories matching this topic...
Multi-axis scoring framework that ranks programmable genome editors across eight orthogonal axes into a single PenScore to guide experimental design and benchmarking.
machine-learning bioinformatics computational-biology crispr crispr-cas9 genome-editing genetic-engineering gene-therapy base-editors recombinases scoring-framework transposase genome-atlas mech-class prime-editors therapeutic-genome-editing pen-assemble
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Jul 5, 2026 - Python
Knowledge graph and GNN benchmark for programmable genome-writing enzymes, with ESM-2 embeddings, GraphSAGE/GAT link prediction, and an editor-selection API.
machine-learning bioinformatics computational-biology pytorch knowledge-graph crispr crispr-target crispr-cas9 artifical-intelligence gnn graphneuralnetworks crispr-design torchgeometric esm-2 recombinases transposase bridgerna genetic-en genome-en
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Jul 5, 2026 - Python
Two-tier classifier for the catalytic mechanism of programmable genome-writing enzymes, with a biochemical gate that correctly labels IS110-family composite recombinases.
machine-learning bioinformatics computational-biology lightgbm crispr crispr-cas9 genetic-engineering gene-editing esm-2 recombinases transposase bridgerna genome-atlas mechanism-classifier
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Updated
Jul 5, 2026 - Python
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