macs3

Here are 8 public repositories matching this topic...

The RESTful MACS3 API Services

api cargo dangerous stability vessel imdg dg lashing macs3 loading-computer dangerouscargo stowman

End-to-end ChIP-seq analysis workflow for Taeniopygia guttata using Linux, BWA, SAMtools, MACS3 and Bioconductor.

linux bash chip-seq macs3

Reproducible ERalpha ChIP-seq analysis in MCF-7 cells: QC, peaks, motifs and pathway enrichment.

Classical bowtie2 + MACS3 ChIP-seq peak calling with matched Input control, real Spt5 data, replicate-concordance QC

bioinformatics snakemake chip-seq bowtie2 macs3

Monthly-built Docker images for macs3

docker macs3

bowtie2 + MACS3 peak calling (Snakemake DAG, SLURM profile) on public CUT&Tag data -- honest CUT&RUN/CUT&Tag disclosure

bioinformatics snakemake chromatin macs3 cut-and-run cut-and-tag

Bulk ATAC-seq: bowtie2 + Tn5 shift + fragment-size/TSS QC + MACS3 peak calling, real Schep et al. 2015 data

bioinformatics snakemake atac-seq bowtie2 macs3 deeptools

A pipeline to compare peaks called in different read count based datasets.

chip-seq atac-seq peaks comparison-tool macs3

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