chris-app

Quality Assessment tool for fetal brain MRIs, able to score each volume through a deep learning regression model. Developed using Python3 and Keras/Tensorflow framework.

A ChRIS DS plugin to convert from medical image data files to display-friendly formats (like png and jpg).

A quick "hack" plugin for freesurfer

Extract surface meshes from in-utero MRI

An app to predict segmented brain MRI images from a given unsegmented brain MRI

Automatic masking of fetal brain images using deep learning

A 3D U-Net effective for Brain MRI segmentation

Interactive digital catalog and product showcase web application, optimized for fast performance and deployed on Netlify.

An app to efficiently perform cortical parcellation and segmentation on raw brain MRI images

A Chris 'ds' plugin to retrieve file/folders from Amazon S3 service.

IRTK fetal brain MRI reconstruction. https://pubmed.ncbi.nlm.nih.gov/22939612/

A Chris 'ds' plugin to push files/folders in input directory to Amazon S3 service.

An app that pulses system information periodically.

A DS plugin to convert NIfTI input to DICOM output

A GPU-aware matrix multiplier. Useful mainly for testing/benchmarking.

An app to decode labels from encoded brain MRI images

A plugin app for Freesurfer reconstruction of brain surfaces. Very early WIP

An App that crashes on purpose with specified exception conditions. Used to debug e2e flow and integration.