pl-reconall

Abstract

A plugin app for Freesurfer reconstruction of brain surfaces

Run

Using docker run

Assign an "input" directory to /incoming and an output directory to /outgoing

docker run -v $(pwd)/in:/incoming -v $(pwd)/out:/outgoing   \
        fnndsc/pl-reconall reconall.py            \
        /incoming /outgoing

This will ...

Make sure that the host $(pwd)/out directory is world writable!