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@seqscope SeqScope

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    11 repositories

    • spatula

      Public
      A C++ Tool for Spatial Transcriptomics
      C++
      •
      Apache License 2.0
      •1•6•3•0•Updated Jul 23, 2026Jul 23, 2026

    • cartloader

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jul 22, 2026Jul 22, 2026

    • pmpoint

      Public
      A C++ Tool for PMTiles Points
      C++
      •
      Apache License 2.0
      •1•0•0•0•Updated Jul 9, 2026Jul 9, 2026

    • ficture

      Public
      Python
      •
      Other
      •10•47•15•0•Updated Jun 1, 2026Jun 1, 2026

    • cartoscope-issue-only

      Public
      This is a public repository to report and share potential issues or bugs related to CartoScope-Open
      Apache License 2.0
      •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

    • NovaScope

      Public
      The pipeline to process Novaseq dataset, from fastq to nge.
      bioinformatics-pipelinesnakemake-workflowspatial-transcriptomics
      bioinformatics-pipelinesnakemake-workflowspatial-transcriptomics
      Python
      •
      Apache License 2.0
      •0•7•1•0•Updated Jan 18, 2026Jan 18, 2026

    • NovaScope-exemplary-downstream-analysis

      Public
      Exemplary downstream analysis for NovaScope
      HTML
      •
      Apache License 2.0
      •0•2•0•0•Updated Jan 18, 2026Jan 18, 2026

    • cartostore

      Public
      Cross-Platform Repository for High-resolution Spatial Transcriptomics Datasets
      MIT License
      •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • historef

      Public
      automated referencing tool between Seq-Scope sequence data and H&E histology image
      Python
      •0•2•0•0•Updated May 28, 2024May 28, 2024

    • STARxy

      Public
      Modified version of STAR for spatial transcriptomics
      C++
      •
      MIT License
      •548•0•0•0•Updated May 28, 2024May 28, 2024

    • STtools

      Public
      R
      •7•12•0•0•Updated Jul 15, 2022Jul 15, 2022
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