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Update strobealign index to format version 5 for strobealign 0.17.0 Test CoverM with Pixi #301: Pull request #296 synchronize by wwood
2m 2s claude/update-strobealign-db-7hos5n
claude/update-strobealign-db-7hos5n
2m 2s
Fix strobealign pregenerated index test to be version-agnostic Test CoverM with Pixi #300: Commit fab6c51 pushed by wwood
1m 40s claude/update-strobealign-db-7hos5n
claude/update-strobealign-db-7hos5n
1m 40s
Update strobealign index to format version 5 for strobealign 0.17.0 Test CoverM with Pixi #299: Pull request #296 opened by wwood
16s claude/update-strobealign-db-7hos5n
claude/update-strobealign-db-7hos5n
16s
Update strobealign index to format version 5 for strobealign 0.17.0 Test CoverM with Pixi #298: Commit 5da16a4 pushed by wwood
16s claude/update-strobealign-db-7hos5n
claude/update-strobealign-db-7hos5n
16s
Add minibwa as a mapper Test CoverM with Pixi #297: Pull request #295 opened by wwood
1m 44s minibwa
minibwa
1m 44s
Add minibwa as a mapper Test CoverM with Pixi #296: Commit b6b6d29 pushed by wwood
1m 55s minibwa
minibwa
1m 55s
lexicmap: Initial efforts. Test CoverM with Pixi #295: Pull request #294 opened by wwood
1m 40s lexicmap
lexicmap
1m 40s
lexicmap: Initial efforts. Test CoverM with Pixi #294: Commit b141305 pushed by wwood
2m 1s lexicmap
lexicmap
2m 1s
Add makedb mode to pre-generate mapping databases Test CoverM with Pixi #293: Pull request #293 synchronize by wwood
1m 38s claude/per-gene-coverage-reporting-ebc0a1
claude/per-gene-coverage-reporting-ebc0a1
1m 38s
genes: Fix genome resolution for generated concatenated references Test CoverM with Pixi #292: Commit 0b5233a pushed by wwood
1m 33s claude/per-gene-coverage-reporting-ebc0a1
claude/per-gene-coverage-reporting-ebc0a1
1m 33s
Add makedb mode to pre-generate mapping databases Test CoverM with Pixi #291: Pull request #293 opened by wwood
1m 49s claude/per-gene-coverage-reporting-ebc0a1
claude/per-gene-coverage-reporting-ebc0a1
1m 49s
genes: Report contig (and genome in genome mode) columns Test CoverM with Pixi #290: Commit ead1bd1 pushed by wwood
1m 54s claude/per-gene-coverage-reporting-ebc0a1
claude/per-gene-coverage-reporting-ebc0a1
1m 54s
genome: Support per-gene coverage via --gff Test CoverM with Pixi #289: Commit 95435c1 pushed by wwood
1m 53s claude/per-gene-coverage-reporting-ebc0a1
claude/per-gene-coverage-reporting-ebc0a1
1m 53s
Add coverm makedb command to pre-generate mapping indexes Test CoverM with Pixi #288: Pull request #290 synchronize by wwood
1m 47s claude/makedb-minimap2-databases-tdvpqy
claude/makedb-minimap2-databases-tdvpqy
1m 47s
makedb: default --mapper to strobealign, matching genome/contig/make Test CoverM with Pixi #287: Commit cb2795e pushed by wwood
1m 43s claude/makedb-minimap2-databases-tdvpqy
claude/makedb-minimap2-databases-tdvpqy
1m 43s
Add coverm makedb command to pre-generate mapping indexes Test CoverM with Pixi #286: Pull request #290 synchronize by wwood
2m 12s claude/makedb-minimap2-databases-tdvpqy
claude/makedb-minimap2-databases-tdvpqy
2m 12s
makedb: accept genome definition args for genome-mode databases Test CoverM with Pixi #285: Commit 1617fb5 pushed by wwood
1m 30s claude/makedb-minimap2-databases-tdvpqy
claude/makedb-minimap2-databases-tdvpqy
1m 30s
contig: Add --gff option to report coverage per gene Test CoverM with Pixi #284: Commit 5eb83f2 pushed by wwood
2m 7s claude/per-gene-coverage-reporting-ebc0a1
claude/per-gene-coverage-reporting-ebc0a1
2m 7s
Add mean_zero_coverage_length coverage method Test CoverM with Pixi #283: Pull request #292 opened by wwood
1m 48s claude/avg-zero-coverage-length-urc193
claude/avg-zero-coverage-length-urc193
1m 48s
Add bowtie2 as a mapper Test CoverM with Pixi #282: Pull request #291 opened by wwood
1m 59s claude/bowtie2-mapper-i9dpvg
claude/bowtie2-mapper-i9dpvg
1m 59s
Add mean_zero_coverage_length coverage method Test CoverM with Pixi #281: Commit dbff109 pushed by wwood
1m 50s claude/avg-zero-coverage-length-urc193
claude/avg-zero-coverage-length-urc193
1m 50s
Add bowtie2 as a mapper Test CoverM with Pixi #280: Commit 04b583e pushed by wwood
1m 39s claude/bowtie2-mapper-i9dpvg
claude/bowtie2-mapper-i9dpvg
1m 39s
Add coverm makedb command to pre-generate mapping indexes Test CoverM with Pixi #279: Pull request #290 synchronize by wwood
1m 40s claude/makedb-minimap2-databases-tdvpqy
claude/makedb-minimap2-databases-tdvpqy
1m 40s
makedb: validate FASTA directly and honor --threads for strobealign Test CoverM with Pixi #278: Commit 4d5a136 pushed by wwood
1m 50s claude/makedb-minimap2-databases-tdvpqy
claude/makedb-minimap2-databases-tdvpqy
1m 50s
Add coverm makedb command to pre-generate mapping indexes Test CoverM with Pixi #277: Pull request #290 opened by wwood
1m 35s claude/makedb-minimap2-databases-tdvpqy
claude/makedb-minimap2-databases-tdvpqy
1m 35s