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@vatlab

Laboratory of Variant Analysis Tools

Dr. Bo Peng's Bioinformatic Tools for Variant Analysis

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  1. sos sos Public

    SoS workflow system for daily data analysis

    Python 284 45

  2. sos-notebook sos-notebook Public

    Multi-language Jupyter Notebook

    CSS 193 16

  3. varianttools varianttools Public archive

    software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis

    C 31 5

  4. jupyterlab-sos jupyterlab-sos Public

    Jupyterlab extension for SoS Polyglot Notebook and Workflow Engine, allows multiple kernels in one notebook

    HTML 77 8

  5. markdown-kernel markdown-kernel Public

    A markdown kernel for Jupyter

    Python 23 1

  6. transient-display-data transient-display-data Public

    A JupyterLab extension that displays transient display messages in console window

    TypeScript 6

Repositories

Showing 10 of 50 repositories
  • sos-notebook Public

    Multi-language Jupyter Notebook

    vatlab/sos-notebook’s past year of commit activity
    CSS 193 BSD-3-Clause 16 39 (3 issues need help) 1 Updated Apr 1, 2026
  • sos-docs Public

    Documentation of SoS

    vatlab/sos-docs’s past year of commit activity
    Jupyter Notebook 2 MIT 11 9 (2 issues need help) 0 Updated Mar 26, 2026
  • sos-lua Public

    SoS Notebook extension for Lua

    vatlab/sos-lua’s past year of commit activity
    Python 0 0 0 0 Updated Mar 26, 2026
  • sos-rmarkdown Public

    A Rmarkdown to SoS Notebook converter

    vatlab/sos-rmarkdown’s past year of commit activity
    Python 11 BSD-3-Clause 1 2 (1 issue needs help) 0 Updated Mar 26, 2026
  • sos-papermill Public

    Batch executor of sos notebooks

    vatlab/sos-papermill’s past year of commit activity
    Jupyter Notebook 6 BSD-3-Clause 0 4 (1 issue needs help) 0 Updated Mar 26, 2026
  • sos-bioinfo Public

    Bioinformatics extensions for SoS

    vatlab/sos-bioinfo’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Mar 26, 2026
  • sos-stata Public

    A SoS language module for Stata

    vatlab/sos-stata’s past year of commit activity
    Python 1 BSD-3-Clause 0 1 0 Updated Mar 26, 2026
  • sos-scilab Public

    sos language module for scilab

    vatlab/sos-scilab’s past year of commit activity
    Python 0 BSD-3-Clause 0 2 0 Updated Mar 26, 2026
  • sos-scala Public

    SoS language module for Scala

    vatlab/sos-scala’s past year of commit activity
    Python 1 BSD-3-Clause 0 7 0 Updated Mar 26, 2026
  • sos-ruby Public

    SoS Notebook extension for ruby

    vatlab/sos-ruby’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Mar 26, 2026

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