Skip to content
View vafadaru's full-sized avatar

Block or report vafadaru

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
vafadaru/README.md

Ulduz Vafadarshamasbi

Research Fellow

Bioinformatics • Biostatistics • Computational Genomics • Epigenomics

Welcome! I’m Ulduz, a Research Fellow with a passion for exploring biology through computation, statistics, and data. Curiosity drives my research, and I enjoy uncovering patterns hidden within complex biological datasets while developing computational solutions that transform genomic data into meaningful biological insights. My research combines bioinformatics, computational biology, biostatistics, statistical genomics, and epigenomics, with experience spanning genome assembly, Hi-C scaffolding, genome and functional annotation, transcriptomics, comparative genomics, structural variant discovery, pan-epigenomics, DNA methylation analysis, and multi-omics integration. I develop scalable and reproducible workflows using high-performance computing (HPC) to analyse plant and microbial genomes and support data-driven biological research. I am passionate about applying statistical analyses and computational approaches to agricultural and biological research, developing robust analytical frameworks that support evidence-based decision-making and advance excellence in agricultural science. My goal is always to develop computational workflows that are efficient, reproducible, well-annotated, and accessible to the broader scientific community. Beyond research, I’m always excited to connect with scientists, developers, and students who share an interest in genomics, bioinformatics, computational biology, and quantitative science. I strongly believe that the best research is built through collaboration, open communication, and continuous learning. Whether it’s discussing new ideas, contributing to open-source projects, or working together on challenging biological questions, I'm always happy to learn, share knowledge, and collaborate.

Research Interests

  • Bioinformatics
  • Biostatistics
  • Statistical Genomics
  • Computational Genomics
  • Epigenomics
  • Genome Assembly
  • Functional Annotation
  • Agricultural Genomics
  • Bioinformatics Workflow Development

Technical Skills

Programming

  • Bash
  • Python
  • R
  • Linux

High-Performance Computing

  • SLURM
  • Singularity
  • Conda
  • Workflow Automation

Bioinformatics

  • Pan-epigenomics
  • Comparative Genomics
  • Genome Assembly
  • Hi-C Scaffolding
  • Genome and Functional Annotation
  • Population Genomics
  • Transcriptomics
  • Multi-omics Integration

What You'll Find Here

This GitHub showcases reproducible workflows and research projects for:

coming soon.....

Let's collabrate! I'm always happy to collaborate on projects involving bioinformatics, genomics, statistical genomics, and computational biology.

Connect

Popular repositories Loading

  1. genome-assembly-pipeline genome-assembly-pipeline Public

  2. Yeast_functional_annotation Yeast_functional_annotation Public

    Shell

  3. vafadaru vafadaru Public

    Research Fellow | Bioinformatics | Biostatistics | Computational Genomics | Epigenomics