Here are the commands this tool provides.
Generate a FASTA file with a certain number of pair bases.
ptsaca gen-ff [-v|--verbose]
Run PTSACA on a given input file using a specified Chunk Size.
ptsaca run <suffix_array_output_file>
Run PTSACA debug program (for development).
ptsaca run-program
Note: you can run the program using "cargo run" during development.
Here are some examples of command one can run.
cargo run gen-ff 700000 generated/output.fasta -v
cargo run run generated/002_70.fasta 5 sa_output.txt
cargo run run-program # Debug
- Create makefile to have "ptsaca"
- Generate synthetic FASTA files (right now are completely random)