A MATLAB GUI for live cell scanning microscopy analysis
NeuronID is an automatic toolkit for processing two-photon calcium imaging data.
cell detection in calcium imaging recordings
Registration of cells across sessions.
Two-photon calcium imaging of cross-orientation suppression across cortical depth in macaque V1. 4,785 ROIs across 28 depths (140-518um) reveal laminar shift from facilitation to suppression, paralleled by gradients in spatial frequency preference, tuning width, and orientation selectivity. Mixed-effects models and bootstrap CIs included.
Accompanying repository to Nature Protocols paper: "Drug self-administration in head-fixed mice" by Elizabeth M. Doncheck et al. (2026).
Open CC-BY titanium headbar (head-fixation headplate) for in-vivo neuroscience — free STEP model, machined in titanium by bxtlab.
The COMBO Window is a chronic cranial implant for mice, designed for long-term, multimodal neural recordings.
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
Learn two-photon microscopy with simple experiments
🎥🐁 Scripts for analysis and visualization of free-moving mouse trajectories
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
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