oncokb

Here are 3 public repositories matching this topic...

htlin222 / ngs-tertiary-analysis-skills

R pipeline for cancer genomics: BAM/VCF to ESMO-compliant clinical reports with OncoKB, variant classification (ESCAT/AMP-ASCO-CAP), CNV, fusion, TMB, MSI, and PubMed/Scopus literature retrieval

bioinformatics r ngs cancer-genomics variant-annotation precision-medicine quarto report-generation oncokb clinical-genomics targets-r esmo-2024 clinical-classification tumor-profiling genomic-reporting

Updated May 11, 2026
R

junehawk / BIKO-GenomeBoard

Star

Korean population-aware genomic variant interpretation pipeline — deterministic ACMG/AMP classification with curate-then-narrate AI Clinical Board. Offline, research-use-only.

bioinformatics genomics civic cancer-genomics clinvar pharmacogenomics hpo ngs-pipeline variant-interpretation rare-disease oncokb clinical-genomics local-llm ollama medgemma acmg-amp korean-population amp-tiering

Updated Jul 1, 2026
Python

AI-assisted molecular tumor board for community cancer centers: NGS → per-patient report, per-gene PICO/PRISMA/GRADE literature appraisal, and a board-ready case deck. React + Cloudflare Pages + Anthropic.

react bioinformatics typescript ngs cancer-genomics claude literature-review clinical-decision-support prisma precision-oncology oncokb systematic-review cloudflare-pages anthropic molecular-tumor-board

Updated Jul 11, 2026
TypeScript

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