teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!

StreptoCAD is an open-source toolbox that automates the design of genome engineering strategies in Streptomyces. It supports CRISPR-based workflows, generating primers, guide sequences, and plasmid simulations to accelerate genetic engineering and natural product discovery.

This repository is used in relation with the Python package teemi for constructing microbial strains to de-bottleneck the strictosidine pathway.

Habitat-Genome Compiler is a safe, local-first mission compiler for speculative habitat and environmental bio-design programs. It turns a mission JSON spec into a ranked candidate set, a markdown dossier, and an auditable local run archive. The project now also includes a browser-based mission studio that can generate valid mission specs through a