Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.
Reproducible computational analysis of gut microbiome dynamics following fecal microbiota transplantation for recurrent C. difficile infection.
Scripts and outputs for the paper "Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM"
Reproducible bioinformatic pipelines, QIIME 2 workflows, and R scripts for analyzing the impact of cecotrophy prevention on the cecal microbiota of guinea pigs (Cavia porcellus).
A quantitative 16S rRNA amplicon sequencing pipeline leveraging the QIIME 2 framework, DADA2 ASV inference, and ANCOM-BC to resolve complex microbial ecologies and pinpoint taxonomic differential abundance.
Harmonized cross-species 16S rRNA comparison of the gut microbiota in EAE mice and human multiple sclerosis
QIIME 2-based pipeline for tracking microbial community succession, taxonomic profiling, and calculating chronological ecological diversity metrics.
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