Genomics of Disease in Wildlife Workshop, Summer 2017
Course agenda
This page contains links to course material from GDW 2017
We will post as much material as possible as soon as possible. Our intent is to leave this material online indefinitely.
Introduction to GDW lecture
Introduction to genomics and sequencing Lecture
Introduction to databases and online resources lecture
BLAST lecture
BLAST exercise
Downloading exercise
NGS raw data and QC lecture
NGS raw data and QC exercise
Sequence mapping lecture
Sequence assembly lecture
Mapping and de novo assembly exercise
Metagenomics lecture
Whole Genome Alignment lecture
Sequence alignments: purpose, assessment and application lecture
Intro to molecular phylogenetics lecture
Beast exercise
Molecular clocks, gene trees and species trees lecture
Selection lecture
Testing for selection in genes
PAML exercise material
Thursday thought exercise
Detecting selection exercise
Coming soon
Intrahost and pooled variation lecture
Intrahost variation exercise
Horizon Scan Exercise