Feature/clarity updates 5#87
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…ks across all directories
…matrix test coverage
…nd expand path blocking tests
…end-to-end I/O tests
…orous JSON state validation tests
…h formal DevSecOps terminology
…ate test assertions
…ronment compliance
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…s and document architectural boundaries
…ce strict licensing validation
…hitecture rationales, and live examples
…event CI/CD log scraping
![github-advanced-security[bot]](https://avatars.githubusercontent.com/in/57789?s=60&v=4){kind=small}
…f sensitive information' Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
Integrated the bioinformatics/sequencing philosophy into the root documentation. Replaced legacy metaphors with enterprise-grade DevSecOps terminology (Zero-Trust, AST-free cartography) across the core, engine, and standards layers.
…cture Applied uniform 'Engineering Highlights' and 'Performance Showcases' to all execution controllers. Rebranded AI Guardrails, Compliance, Mainframe Extraction, and Security suites to highlight O(1) memory shielding and deterministic mapping.
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Description of Structural Changes
Visual Observatory Testing
The Differential Scan Acknowledgement