Skip to content

[2/4] Add calculate_image_features with skimage + squidpy-native features #1190

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
timtreis wants to merge 9 commits into
base: main
Choose a base branch
from
+1,315 −0
Open

[2/4] Add calculate_image_features with skimage + squidpy-native features #1190

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
9 commits
Select commit Hold shift + click to select a range
c2d7c3e
Add calculate_image_features with skimage + squidpy-native features
May 27, 2026
a612532
Apply simplify-review fixes; scrub split-PR commentary
May 27, 2026
649fa1e
Drop stray PR-#982 reference from test section header
May 27, 2026
9c1c34f
Merge branch 'main' into feature/image-features-scaffold
selmanozleyen May 29, 2026
f0b1e37
Merge branch 'main' into feature/image-features-scaffold
selmanozleyen Jun 1, 2026
9628190
Address review: regionprops_table rewrite, channels hint, feature docs
timtreis Jun 3, 2026
20c2522
simplify: extract _regionprops_table_to_df helper
timtreis Jun 3, 2026
ef12eca
Merge remote-tracking branch 'origin/main' into feature/image-feature…
timtreis Jun 3, 2026
822f4af
Merge branch 'main' into feature/image-features-scaffold
timtreis Jun 9, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions docs/api.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -147,6 +147,7 @@ See the {doc}`extensibility guide </extensibility>` for how to implement a custo
.. autosummary::
:toctree: api

experimental.im.calculate_image_features
experimental.tl.calculate_tiling_qc
experimental.tl.TilingQCParams
experimental.pl.tiling_qc
Expand Down
2 changes: 2 additions & 0 deletions src/squidpy/experimental/im/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@
WekaParams,
detect_tissue,
)
from ._feature import calculate_image_features
from ._make_tiles import make_tiles, make_tiles_from_spots
from ._qc_image import qc_image
from ._qc_metrics import QCMetric
Expand All @@ -24,6 +25,7 @@
"StainReference",
"WekaParams",
"apply_stain_normalization",
"calculate_image_features",
"detect_tissue",
"fit_stain_reference",
"make_tiles",
Expand Down
Loading
Loading