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docs: add inline example plot to sc.pl.rank_genes_groups_stacked_violin#4057

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flying-sheep merged 1 commit intoscverse:mainfrom
Ekin-Kahraman:docs/inline-plot-stacked-violin
Apr 17, 2026
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docs: add inline example plot to sc.pl.rank_genes_groups_stacked_violin#4057
flying-sheep merged 1 commit intoscverse:mainfrom
Ekin-Kahraman:docs/inline-plot-stacked-violin

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Part of #1664. Converts existing doctest to rendered plot showing top marker genes per group on PBMC 68k reduced.

Part of scverse#1664. Converts existing doctest example to a rendered plot
showing top marker genes per group on PBMC 68k reduced.
@Ekin-Kahraman Ekin-Kahraman mentioned this pull request Apr 11, 2026
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codecov Bot commented Apr 11, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.62%. Comparing base (1f9b5ca) to head (ef641ad).
⚠️ Report is 8 commits behind head on main.
✅ All tests successful. No failed tests found.

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #4057   +/-   ##
=======================================
  Coverage   78.62%   78.62%           
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  Files         117      117           
  Lines       12727    12727           
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  Hits        10006    10006           
  Misses       2721     2721           
Flag Coverage Δ
hatch-test.low-vers 77.92% <ø> (ø)
hatch-test.pre 78.50% <ø> (ø)

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Files with missing lines Coverage Δ
src/scanpy/plotting/_tools/__init__.py 76.17% <ø> (ø)

@flying-sheep flying-sheep added this to the 1.12.2 milestone Apr 17, 2026
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flying-sheep commented Apr 17, 2026

Thanks! This one doesn’t look right because of a seaborn bug, see #3991: https://icb-scanpy--4057.com.readthedocs.build/en/4057/api/generated/scanpy.pl.rank_genes_groups_stacked_violin.html

@flying-sheep flying-sheep merged commit 063262b into scverse:main Apr 17, 2026
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meeseeksmachine pushed a commit to meeseeksmachine/scanpy that referenced this pull request Apr 17, 2026
flying-sheep pushed a commit that referenced this pull request Apr 17, 2026
…sc.pl.rank_genes_groups_stacked_violin) (#4068)

Co-authored-by: Ekin Kahraman <evk23umu@uea.ac.uk>
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