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SpatialFeaturePlot errors after V5 installation

Status: Open.

#10374 In satijalab/seurat;

· chrkuo opened on Apr 18, 2026

BUG: FeaturePlot generates empty plot when plotting and rasterizing multiple features (raster, order, combine = T)

bugSomething isn't workingSomething isn't working

Status: Open.

#10346 In satijalab/seurat;

· YoukaiFromAccounting opened on Mar 25, 2026

BUG: RunPCA not working properly, throws error in RunUMAP. Non-finite entries in the input matrix.

bugSomething isn't workingSomething isn't working

Status: Open.

#10343 In satijalab/seurat;

· NickOGrady opened on Mar 24, 2026

split() before Sketch Integration takes forever. Any workaround?

Status: Open.

#10316 In satijalab/seurat;

· hchintalapudi opened on Mar 3, 2026

What have residual features argument in SCTransform done?

Status: Open.

#10297 In satijalab/seurat;

· shihsama opened on Feb 5, 2026

If I need to do downsampling before DEA ?

Status: Open.

#10291 In satijalab/seurat;

· Xiangyi-Deng opened on Jan 30, 2026

TransferData error :Error in .subscript.2ary(x, i, , drop = TRUE) : subscript out of bounds

Status: Open.

#10279 In satijalab/seurat;

· xiangyupan opened on Jan 17, 2026

BUG: _R_CHECK_LIMIT_CORES_ was set to TRUE during initialization

bugSomething isn't workingSomething isn't working

Status: Open.

#10275 In satijalab/seurat;

· kotai-michael opened on Jan 15, 2026

BUG: seurat-wrappers::alra.R

bugSomething isn't workingSomething isn't working

Status: Open.

#10252 In satijalab/seurat;

· turkeyri opened on Dec 17, 2025

beta -> v5.4.0: Updating Seurat objects w/ Visium segmentations

Status: Open.

#10245 In satijalab/seurat;

· anashen opened on Dec 15, 2025

BUG: <SpatialFeaturePlot(image.alpha = 0) still performs expensive image-related work (≈10× slower than point-only path)>

bugSomething isn't workingSomething isn't working

Status: Open.

#10243 In satijalab/seurat;

· LeafLight opened on Dec 14, 2025

FindIntegrationAnchors Hangs When Run in Parallel

Status: Open.

#10238 In satijalab/seurat;

· mfurla opened on Dec 11, 2025