Affinity Proteomics Data Analysis

Overview

Hands-on training project using an Olink/SomaScan-style affinity-proteomics training dataset.

Workflow

Protein abundance data → QC → Normalization → Differential analysis → FDR correction → Volcano plot → Pathway interpretation

Tools

• Python
• Pandas
• SciPy
• Matplotlib

Key concepts

• NPX-style protein abundance
• Quality control
• Normalization
• Differential protein analysis
• FDR
• Volcano plots
• Pathway interpretation

Dataset

This repository uses a simulated training dataset for educational purposes. It is not an actual Olink or SomaScan experiment.