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Pull requests: ratschlab/metagraph

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Pull requests list

Support loading RowDisk annotations without mmap
#618 opened Apr 25, 2026 by karasikov Member Loading…
2 of 3 tasks
2
Added docs for the CoordToHeader functionality
#616 opened Apr 23, 2026 by karasikov Member Loading…
Added support for conversion row_diff_brwt -> row_diff_disk
#612 opened Apr 20, 2026 by karasikov Member Loading…
8
Map coords to headers in align with CoordToHeader
#609 opened Apr 5, 2026 by karasikov Member Loading…
1
SSHash: RowDiffChar annotation format with sparse successor storage
#604 opened Mar 7, 2026 by adamant-pwn Member Loading…
Added support for indexing sequence IDs as counts
#560 opened Nov 4, 2025 by karasikov Member Loading…
Batch aggregation (two-level batching)
#522 opened May 16, 2025 by karasikov Member Loading…
5
use sparse bit vectors for rainbow matrices
#518 opened May 12, 2025 by hmusta Collaborator Loading…
Port row_diff_traverse from DBGSuccinct
#512 opened Mar 13, 2025 by hmusta Collaborator Loading…
Option to annotate a representative node from each monochromatic contig
#500 opened Oct 2, 2024 by hmusta Collaborator Loading…
1
Count-based differential assembly
#487 opened Jun 11, 2024 by hmusta Collaborator Loading…
Less stringent alignment and seed filtering
#453 opened Jun 5, 2023 by hmusta Collaborator • Draft
5 tasks done
2
Support outputting alignments in GAF format
#384 opened Feb 7, 2022 by hmusta Collaborator • Draft
4
implement the taxonomic classification with queries on the annotation matrix
#347 opened Aug 2, 2021 by heracle Collaborator Loading…
11
support for multiple successors at forks
#329 opened Jun 16, 2021 by karasikov Member Loading…
8
mark rd successors only in forks
#308 opened Apr 2, 2021 by karasikov Member Loading…
Alignment and query cleanups
#271 opened Jan 19, 2021 by karasikov Member • Draft
Lower RAM implementation of slice_columns for BRWT
#226 opened Oct 26, 2020 by hmusta Collaborator • Draft
10
Add checkpointing to metagraph build
#197 opened Sep 8, 2020 by danieldanciu Contributor • Draft
46
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