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Enhance cell biology documentation with annotations, images, and protocols#100

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RainPPR merged 7 commits into
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Jun 14, 2026
Merged

Enhance cell biology documentation with annotations, images, and protocols#100
RainPPR merged 7 commits into
mainfrom
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@RainPPR RainPPR commented Jun 14, 2026

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Summary by cubic

扩充细胞生物学文档,加入实验步骤、教学注释与20+张配图,并重组章节以优化教学流程。新增核酸/蛋白质专题内容、膜与生理补充、以及分泌与降解路径说明。

  • New Features

    • 充实 docs/science/cell/1.md:加入版本注释(沪科/浙科/苏教),分光光度法,Na/Cl 等元素说明与精准施肥,甲基绿–派洛宁染色(含缓冲液 pH/步骤),尿蛋白试纸与双缩脲试剂使用顺序,核酸中特殊碱基 5‑BrdU/Z/I,蛋白质结构/变性、纤维状/球状、持家/奢侈、结合蛋白与泛素–蛋白酶体通路,“甜味”机理与配图。
    • 更新 docs/science/cell/{2,3}.md:补充显微镜与膜生物学(含“人工膜”)、渗透/扩散、原生质/原生质层术语与示例,并插图说明。
    • 插入图像 docs/science/cell/image-1.pngimage-22.pngimage.png;完善 RNA/DNA 起源与病毒相关说明,补充 docs/science/species/{1,2}.md 注释。
  • Refactors

    • 删除 docs/science/cell/4.md 并并入 1–3 章;按评审建议统一用词/编号与格式,微调 docs/science/element/fe.mddocs/science/species/{1,2}.md
    • 更新 .vscode/settings.json(开启 format‑on‑save、on‑paste、on‑type,启用 markdown.validate.enabled)。

Written for commit 2576932. Summary will update on new commits.

Review in cubic

RainPPR and others added 4 commits June 12, 2026 22:35
Enrich docs/science/cell content by adding multiple pedagogical annotations, experimental protocols and clarifications, and including seven new images (image-11.png .. image-17.png). Changes in 1.md add edition-specific notes (沪科技版) on element roles and spectrophotometry, a detailed methyl green–pyronin staining protocol, urine protein test guidance, and an expanded section on the ubiquitin–proteasome degradation pathway. Changes in 2.md add historical/technical notes (沪科技版, 苏教版, 浙科版) about microscopy and membrane structure, insert several illustrative images, and clarify concepts such as protoplast vs. protoplast layer and osmotic/ diffusion examples. These edits provide more practical explanations and teaching aids for the cell biology material.

Co-Authored-By: RaineMtF <192512683+RaineMtF@users.noreply.github.com>
Add explanatory blocks and figures to cell chapters, expand discussions on elemental composition, inorganic salts, organic compounds, RNA/DNA origin, protein structure/denaturation, and membrane biology. Inserted multiple pedagogical excerpts (沪科/沪科教版/浙科版) and an "Artificial membrane" section in docs/science/cell/1.md and 2.md; added images image-18.png..image-22.png and updated references. Also include minor updates to docs/science/element/fe.md and docs/science/species/1.md to keep content consistent. These changes enrich explanations and visuals for students and improve cross-references between topics.

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Code Review

This pull request reorganizes and expands the biology documentation, primarily consolidating content on cell elements, water, nucleic acids, and proteins into docs/science/cell/1.md while removing redundant sections from docs/science/cell/4.md. It also updates VS Code settings and adds curriculum-specific notes to the species documentation. The review feedback highlights several content and terminology errors in the newly added text, such as the incorrect classification of sodium and chlorine as macroelements, multiple typos (e.g., '机盐离子' and 'carbohy- drates'), non-standard chemical terminology (using '胺' instead of '氨' and '脢' instead of '酶'), the use of non-standard Kangxi radical characters, and an abruptly cut-off sentence.

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Comment thread docs/science/cell/1.md Outdated
组成细胞的化学元素,常见的有 20 多种,其中有些含量多,有些含量很少。一般来说,细胞中含量最多的就是碳元素和氧元素,以人和玉米细胞为例,人的干重 C O N H 依次最多,人的鲜重、玉米的干重、玉米的鲜重都是 O C H N 依次最多。核心原因是玉米富含糖类(例如纤维素细胞壁),糖类中氧元素可以在烘干中保留,而不像自由水那样脱去。

细胞中常见的化学元素中,含量较多的有 C、H、O、N、P、S、K、Ca、Mg 等元素,称为大量元素;有些元素含量很少,如 Fe、Mn、Zn、Cu、B、Mo 等,称为微量元素。
细胞中常见的化学元素中,含量较多的有 C、H、O、N、P、S、K、Ca、Mg、Na、Cl 等元素,称为大量元素;有些元素含量很少,如 Fe、Mn、Zn、Cu、B、Mo、Ni、Co、Se 等,称为微量元素。

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medium

In Chinese high school biology textbooks (such as the PEP and Zhike versions), macroelements (大量元素) are explicitly defined as C, H, O, N, P, S, K, Ca, Mg (9 elements). Classifying Na and Cl as macroelements is inconsistent with standard curriculum definitions and may mislead students or readers. It is recommended to remove Na and Cl from the macroelements list.

Suggested change
细胞中常见的化学元素中,含量较多的有 C、H、O、N、P、S、K、Ca、Mg、Na、Cl 等元素,称为大量元素;有些元素含量很少,如 Fe、Mn、Zn、Cu、B、Mo、Ni、Co、Se 等,称为微量元素。
细胞中常见的化学元素中,含量较多的有 C、H、O、N、P、S、K、Ca、Mg 等元素,称为大量元素;有些元素含量很少,如 Fe、Mn、Zn、Cu、B、Mo、Ni、Co、Se 等,称为微量元素。

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7 issues found across 31 files

Confidence score: 4/5

  • In docs/science/cell/1.md, there are concrete content-accuracy issues (e.g., “机盐离子” missing “无”, and the large-element list including Na/Cl against common textbook conventions) that could mislead learners if merged as-is — correct these biology terms and align the list with the intended curriculum standard before merging.
  • docs/science/cell/1.md contains an incomplete definition that breaks at “发生特定的”, which leaves a key concept unfinished and can confuse readers — complete the sentence so the definition is self-contained before merging.
  • docs/science/cell/1.md has multiple terminology/orthography consistency problems (nonstandard spellings, variant glyphs, “氨基/胺基”, and split “carbohy- drates”) that hurt searchability and editorial quality — run a terminology/style pass to normalize wording and character forms before merging.

Reply with feedback, questions, or to request a fix.

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RainPPR and others added 2 commits June 14, 2026 22:23
Co-authored-by: gemini-code-assist[bot] <176961590+gemini-code-assist[bot]@users.noreply.github.com>

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1 issue found across 1 file (changes from recent commits).

Tip: Review your code locally with the cubic CLI to iterate faster.

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Comment thread docs/science/cell/1.md Outdated
Co-authored-by: cubic-dev-ai[bot] <191113872+cubic-dev-ai[bot]@users.noreply.github.com>
@RainPPR RainPPR merged commit 06e7d88 into main Jun 14, 2026
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