Skip to content

@cortex-lab The Cortical Processing Laboratory at UCL

Change the repository type filter

All

    Repositories list

    39 repositories

    • alyx

      Public
      Database for experimental neuroscience laboratories
      djangodatabaserest-api
      djangodatabaserest-apineuroscienceexperimentsneuroinformatics
      Python
      •12•51•69•7•Updated Apr 13, 2026Apr 13, 2026

    • phy

      Public
      phy: interactive visualization and manual spike sorting of large-scale ephys data
      pythondata-analysiselectrophysiology
      pythondata-analysiselectrophysiology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •185•408•246•5•Updated Apr 8, 2026Apr 8, 2026

    • phylib

      Public
      Lightweight electrophysiological data analysis library
      pythondata-analysiselectrophysiology
      pythondata-analysiselectrophysiology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •28•16•8•4•Updated Mar 11, 2026Mar 11, 2026

    • PinkRigs

      Public
      Shared code for processing data on the pink rigs
      Python
      •1•6•8•0•Updated Dec 12, 2025Dec 12, 2025

    • allenCCF

      Public
      Tools to work with Allen Inst CCF data in matlab
      MATLAB
      •79•147•28•2•Updated Jul 15, 2025Jul 15, 2025

    • datostim

      Public
      C
      •
      MIT License
      •0•0•0•0•Updated Jun 17, 2025Jun 17, 2025

    • neuropixels

      Public
      Information about Neuropixels electrode arrays
      MATLAB
      •15•96•46•0•Updated Dec 15, 2024Dec 15, 2024

    • WeekendWater

      Public
      A script to post weekend water to Alyx and email users
      MATLAB
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • psychofit

      Public
      A module for fitting 2AFC psychometric data
      Jupyter Notebook
      •
      MIT License
      •6•7•0•1•Updated Jul 2, 2024Jul 2, 2024

    • Rigbox

      Public
      A MATLAB toolbox for running behavioral neuroscience experiments and managing data
      HTML
      •
      GNU General Public License v3.0
      •20•33•98•6•Updated May 28, 2024May 28, 2024

    • LabCI

      Public
      Automation server for MATLAB & Python continuous integration, written in Node.js
      continuous-integrationmatlab
      continuous-integrationmatlab
      JavaScript
      •1•4•19•9•Updated Mar 26, 2024Mar 26, 2024

    • KiloSort

      Public
      GPU code for spike sorting
      MATLAB
      •
      GNU General Public License v2.0
      •101•189•137•1•Updated Feb 19, 2024Feb 19, 2024

    • spikes

      Public
      cortex lab code for electrophysiology
      MATLAB
      •84•84•9•4•Updated Feb 5, 2024Feb 5, 2024

    • Suite2P

      Public
      Tools for processing 2P recordings
      MATLAB
      •
      Other
      •67•132•44•1•Updated Oct 9, 2023Oct 9, 2023

    • sortingQuality

      Public
      Functions to assess quality of spike sorting results
      MATLAB
      •
      GNU General Public License v3.0
      •23•34•2•0•Updated Sep 6, 2023Sep 6, 2023

    • signals

      Public
      Intuitive behavioral neuroscience experiment design in MATLAB
      C
      •
      Apache License 2.0
      •10•3•0•1•Updated Aug 31, 2023Aug 31, 2023

    • alyx-matlab

      Public
      Some MATLAB functions for easier interfacing with an Alyx database
      MATLAB
      •3•3•22•1•Updated Aug 31, 2023Aug 31, 2023

    • Transcriptomics

      Public
      MATLAB software for analysis of single-cell RNA sequencing data, including probabilistic clustering, latent factor modeling, nbtSNE, visualization tools
      scrna-seq
      scrna-seq
      MATLAB
      •
      GNU General Public License v3.0
      •4•7•0•0•Updated Aug 2, 2023Aug 2, 2023

    • PoppyRig

      Public
      Code for poppy rig
      MATLAB
      •0•0•0•0•Updated Aug 24, 2022Aug 24, 2022

    • expDefinitions

      Public
      experiment definition files (primarily Signals)
      MATLAB
      •0•0•1•0•Updated Jul 29, 2022Jul 29, 2022

    • Lilrig

      Public
      code specific to Lilrig
      MATLAB
      •0•0•0•0•Updated Jun 15, 2022Jun 15, 2022

    • wheelAnalysis

      Public
      MATLAB
      •3•5•2•0•Updated Jan 3, 2021Jan 3, 2021

    • npytools

      Public
      [WIP] Command-line utilities to deal with NPY array files
      pythonnumpyscientific-computing
      pythonnumpyscientific-computingnumerical-computationnumpy-arraysnpynpy-files
      Python
      •
      MIT License
      •1•9•0•0•Updated Jun 22, 2020Jun 22, 2020

    • npy_matlab

      Public
      Experimental code to read/write NumPy .NPY files in MATLAB
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •220•3•0•0•Updated Jun 19, 2020Jun 19, 2020

    • pykilosort

      Public
      [WIP] Python port of Kilosort 2
      Python
      •
      GNU General Public License v2.0
      •26•1•0•0•Updated Mar 6, 2020Mar 6, 2020

    • widefield

      Public
      Image processing and tools for widefield imaging
      MATLAB
      •
      GNU General Public License v3.0
      •5•20•8•0•Updated Dec 7, 2019Dec 7, 2019

    • mmmGUI

      Public
      "mouse movie manager" and GUI
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•4•0•Updated Nov 28, 2019Nov 28, 2019

    • alf2neuroscope

      Public
      Converts ALF format to be read in neuroscope
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 8, 2019Nov 8, 2019

    • ALF

      Public
      0•1•0•0•Updated Nov 8, 2019Nov 8, 2019

    • mpep

      Public
      mPEP runs experiments where stimuli and timings can be decided in advance (i.e. not in the context of behavior)
      MATLAB
      •1•0•0•0•Updated Oct 8, 2019Oct 8, 2019
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.