Skip to content
Change the repository type filter

All

    Repositories list

    • Group website of the CODIA lab
      SCSS
      MIT License
      0000Updated Apr 7, 2026Apr 7, 2026
    • panacus

      Public
      Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
      Rust
      MIT License
      11129220Updated Mar 20, 2026Mar 20, 2026
    • sqz

      Public
      /ˈskuzi/
      Rust
      MIT License
      11000Updated Mar 2, 2026Mar 2, 2026
    • HySim

      Public
      Simulation pipeline simulating short single cell (10x Chromium) and long bulk (PacBio) reads from the same data
      Python
      0000Updated Nov 10, 2025Nov 10, 2025
    • Rust
      MIT License
      0000Updated Nov 4, 2025Nov 4, 2025
    • scallop2

      Public
      C++
      BSD 3-Clause "New" or "Revised" License
      7000Updated Nov 4, 2025Nov 4, 2025
    • hprc-qc

      Public
      Perl
      Apache License 2.0
      1000Updated Oct 2, 2025Oct 2, 2025
    • Simple tool to remove segments and links from GFA files that are not covered by paths
      Rust
      MIT License
      0000Updated Sep 5, 2025Sep 5, 2025
    • pqa

      Public
      Pangenome Quality Assessment
      Nextflow
      0000Updated Jul 1, 2025Jul 1, 2025
    • GFAffix

      Public
      GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
      Rust
      MIT License
      53720Updated May 29, 2025May 29, 2025
    • .github

      Public
      0000Updated May 26, 2025May 26, 2025
    • spp-dcj

      Public
      Python
      MIT License
      0300Updated Mar 6, 2025Mar 6, 2025
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.