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@TrynkaLab Trynka group at Wellcome Sanger Institute

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    20 repositories

    • tglow-pipeline

      Public
      Nextflow pipeline for processing high content imaging data
      nextflowimage-processinghci
      nextflowimage-processinghcitglow
      Python
      •1•0•2•0•Updated Jul 29, 2026Jul 29, 2026

    • cNMF

      Public
      Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
      Jupyter Notebook
      •
      MIT License
      •74•0•0•0•Updated Jul 28, 2026Jul 28, 2026

    • sc-blipper

      Public
      A Nextflow pipline for running single cell post processing
      enrichmentnextflowcnmf
      enrichmentnextflowcnmf
      Nextflow
      •3•2•0•0•Updated Jul 22, 2026Jul 22, 2026

    • ProliferationAnalysis

      Public
      Proliferation modeling of cell division dyes in R
      rproliferation
      rproliferation
      HTML
      •
      Other
      •0•1•0•0•Updated Jul 6, 2026Jul 6, 2026

    • tglow-r

      Public
      R package for high content image analysis
      rhciimage-analysis
      rhciimage-analysishigh-content-imagingtglow
      R
      •0•0•0•0•Updated Jul 3, 2026Jul 3, 2026

    • poodleR

      Public
      POOled donor Deconvolution by LEast square Regression
      R
      •
      GNU General Public License v3.0
      •0•1•5•0•Updated Jun 28, 2026Jun 28, 2026

    • Perez_Alcantara_pooled_iMGL

      Public
      Code for Perez-Alcantara et al., 2025
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 28, 2026Jun 28, 2026

    • VIDRA

      Public
      Code relevant to the VIDRA manuscript
      Jupyter Notebook
      •3•3•0•0•Updated Jun 21, 2026Jun 21, 2026

    • tglow-core

      Public
      Python package supporting tglow-pipeline
      pythonimage-processingtglow
      pythonimage-processingtglow
      Python
      •
      MIT License
      •0•0•0•0•Updated May 13, 2026May 13, 2026

    • ldsc

      Public
      Fix for FH error
      Python
      •
      GNU General Public License v3.0
      •13•0•0•0•Updated Apr 29, 2026Apr 29, 2026

    • CellDivider

      Public
      Main repository for the CellDivider project
      R
      •0•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • .github

      Public
      Main repo for storing public facing README for the TrynkaLab organization
      0•0•0•0•Updated Mar 13, 2026Mar 13, 2026

    • tglow-manuscript

      Public
      Scripts supporting the first tglow manuscript
      R
      •0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • CellDivider_mlp

      Public
      Python
      •0•0•0•0•Updated Feb 4, 2026Feb 4, 2026

    • tglow-dino4cells

      Public
      Adaptation of DINO4Cells to produce embeddings per channel
      pythondeep-learninghci
      pythondeep-learninghciimage-analysistglow
      Python
      •0•0•0•0•Updated Jan 27, 2026Jan 27, 2026

    • clij2-fft

      Public
      Fork of CLIJ2-fft to fix issues and work with the sanger farm-22 compute
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •9•0•0•0•Updated Jan 24, 2026Jan 24, 2026

    • washer_et_al_microglia_media

      Public
      R
      •0•2•0•0•Updated Dec 12, 2022Dec 12, 2022

    • CHEERS

      Public
      Python
      •4•8•5•0•Updated May 25, 2022May 25, 2022

    • Treg_Multiomics

      Public
      R
      •1•3•0•0•Updated Mar 7, 2022Mar 7, 2022

    • T-cell-costimulation

      Public
      R
      •0•0•0•0•Updated Jun 9, 2021Jun 9, 2021
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