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    11 repositories

    • nextflow

      Public
      A DSL for data-driven computational pipelines
      Groovy
      •
      Apache License 2.0
      •787•0•0•0•Updated Sep 6, 2025Sep 6, 2025

    • OpenMS

      Public
      The codebase of the OpenMS project
      C++
      •
      Other
      •428•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • napari

      Public
      napari: a fast, interactive, multi-dimensional image viewer for python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •487•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • scanpy

      Public
      Single-cell analysis in Python. Scales to >100M cells.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •741•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • biocypher

      Public
      A unifying framework for biomedical research knowledge graphs
      Python
      •
      MIT License
      •51•0•0•0•Updated Jun 24, 2025Jun 24, 2025

    • .github

      Public
      MIT License
      •0•0•0•0•Updated Jun 20, 2025Jun 20, 2025

    • CellProfiler

      Public
      An open-source application for biological image analysis
      Python
      •
      Other
      •419•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • biopython

      Public
      Official git repository for Biopython (originally converted from CVS)
      Python
      •
      Other
      •1.9k•0•0•0•Updated Jun 17, 2025Jun 17, 2025

    • stardist

      Public
      StarDist - Object Detection with Star-convex Shapes
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •269•0•0•0•Updated May 30, 2025May 30, 2025

    • AI-Scientist

      Public
      The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑‍🔬
      Jupyter Notebook
      •
      Apache License 2.0
      •1.9k•0•0•0•Updated Apr 26, 2025Apr 26, 2025

    • ngl

      Public
      WebGL protein viewer
      TypeScript
      •
      MIT License
      •175•0•0•0•Updated Apr 14, 2025Apr 14, 2025
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