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    33 repositories

    • nolanlab-ephys

      Public
      Ephys pipeline component for the Nolan Lab. Transforms raw ephys data into a SpikeInterface sorting analyzer
      Python
      •
      MIT License
      •1•1•0•0•Updated Apr 17, 2026Apr 17, 2026

    • analysis_pipelines

      Public
      A description of the major analysis pipeline's used in the Nolan Lab. This repo will describe the general principles behind the pipelines and link to implementa…
      MIT License
      •0•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • clusters

      Public
      Python
      •0•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • nolanlab-dlc

      Public
      Package to help run deeplabcut on EDDIE in NolanLab
      Python
      •1•0•0•0•Updated Nov 26, 2025Nov 26, 2025

    • AxonDiameters

      Public
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 12, 2025Jan 12, 2025

    • MattNolanLab.github.io

      Public template
      The lab website!
      HTML
      •13k•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • eLife_Grid_anchoring_2024

      Public
      Code for reproducing plots in Clark and Nolan 2024
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • in_vivo_ephys_openephys

      Public
      Analysis for in vivo electrophysiology recordings saved in open ephys format.
      Python
      •
      GNU General Public License v3.0
      •0•0•18•0•Updated Feb 13, 2024Feb 13, 2024

    • psam_pilot

      Public
      Repository for analysing and plotting data from pilot experiment testing inactivation of L1 & L2 INs with an ultrapotent PSAM-PSEM system. Magnus CJ, Lee PH, Bo…
      R
      •1•0•0•0•Updated May 25, 2023May 25, 2023

    • nolan-brainrender

      Public
      Repository for plotting different brain areas using BrainRender
      Python
      •5•0•0•0•Updated Feb 14, 2023Feb 14, 2023

    • pySPAD-rtd

      Public
      read the docs files for the SPAD project
      Python
      •0•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • lec_to_mec

      Public
      Analysis code used to generate figures and statistical ouputs for https://www.biorxiv.org/content/10.1101/2022.08.25.505296v1
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 30, 2022Dec 30, 2022

    • Stereo_targeting

      Public
      Visualise injection / tetrode trajectories
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 30, 2022Dec 30, 2022

    • openephys-fileIO

      Public
      For writing of continuous and binary file format of open-ephys
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 25, 2022Nov 25, 2022

    • OE_whitening

      Public
      C++
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Nov 11, 2022Nov 11, 2022

    • OESpikeUtilities

      Public
      C++
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 11, 2022Nov 11, 2022

    • SpatialEphysAnalysis

      Public
      Analysis for in vivo extracellular recordings.
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 11, 2022Nov 11, 2022

    • Ramp_analysis

      Public
      HTML
      •
      MIT License
      •4•1•0•0•Updated Aug 23, 2022Aug 23, 2022

    • Ramp_simulations

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 11, 2022Aug 11, 2022

    • R.Tutorial

      Public
      Python
      •2•1•0•0•Updated Jan 14, 2021Jan 14, 2021

    • grid_cell_analysis

      Public
      Analysis for grid cells, grid fields, and head direction.
      Python
      •
      GNU General Public License v3.0
      •6•19•0•0•Updated Oct 26, 2020Oct 26, 2020

    • Tetroplater

      Public
      An open-source circuit for microwire tetrode gold plating
      MIT License
      •10•0•0•0•Updated Aug 22, 2020Aug 22, 2020

    • Inter_Intra_Variation_Executable

      Public
      Code for executable version of Pastoll et al. 2020
      R
      •
      GNU General Public License v2.0
      •1•1•0•0•Updated Aug 16, 2020Aug 16, 2020

    • Inter_Intra_Variation

      Public
      Analyses for investigation of large scale organisation of stellate cell properties
      HTML
      •
      GNU General Public License v2.0
      •3•0•0•0•Updated Jul 6, 2020Jul 6, 2020

    • EphysAnalysisTools

      Public
      Extracellular electrophysiology data analysis tools
      neuroscienceelectrophysiologyhacktoberfest
      neuroscienceelectrophysiologyhacktoberfest
      Python
      •0•0•2•0•Updated Oct 5, 2019Oct 5, 2019

    • Tennantetal2018

      Public
      Code used for behavioural analysis in Tennant et al, 2018 (Cell Reports)
      HTML
      •0•1•0•0•Updated Sep 18, 2018Sep 18, 2018

    • Theta-Sequence-Network-Model

      Public
      Code for the 2016 eLife paper
      Python
      •1•1•0•0•Updated Dec 5, 2016Dec 5, 2016

    • Independent-Theta-Phase-Coding

      Public
      Code for 2015 eLife paper
      MATLAB
      •1•4•0•0•Updated Nov 15, 2016Nov 15, 2016

    • ei-attractor

      Public
      Excitatory-Inhibitory continuous attractor model of grid cells.
      Python
      •
      GNU General Public License v3.0
      •2•6•0•0•Updated Jul 2, 2015Jul 2, 2015

    • gridcells

      Public
      Grid cell data analysis package.
      Python
      •
      GNU General Public License v3.0
      •7•6•4•0•Updated Jun 8, 2015Jun 8, 2015
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