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fix(scan): preserve tracked files without exposing ignored files - #320

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mldangelo-oai wants to merge 7 commits into
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mdangelo/codex/respect-scan-inventory-gitignore-20260808
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fix(scan): preserve tracked files without exposing ignored files#320
mldangelo-oai wants to merge 7 commits into
mainfrom
mdangelo/codex/respect-scan-inventory-gitignore-20260808

fix(scan): preserve explicit scopes and nested worktree files

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