Sync: BioPortal v6.8.0 release #18
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…gies_api into feature/user-admin-endpoints
Feature: Ontology Admin Endpoints for Logs and Submission Management
…ests Replace non-idiomatic assertions with Minitest equivalents: - assert(x == y) -> assert_equal - .eql?() -> assert_equal - assert !x.empty? -> assert_operator x.length, :>, 0 - submissions.all? -> submissions.each for better error messages Extract repeated contact validation into helper method to reduce duplication. Fix intermittent test failures by sorting array keys before comparison to handle non-deterministic ordering. refs #197
- Replace class variables (@@) with class instance variables using accessors - Add attr_accessor definitions for shared test state - Modernize assertions to Minitest style (assert_equal, assert_includes, assert_nil) - Improve code formatting and readability
…dition - Replace random .sample(3) with deterministic .first(3) - Use dynamic assertion for keep_ids count instead of hardcoded value - Capture process_id before use for clarity - Simplify polling loop condition to check only for 'done' or 'errors' - Clean up assertion message formatting for consistency
…n/deletion - Replace `assert 201, ...` with `assert_equal 201, ...` to properly compare response status. - Add GET checks after slice creation to confirm the new slice exists. - Remove redundant manual reset of LinkedData.settings.enable_security. - Update DELETE test to expect 204 (No Content) instead of 201. - Add GET checks after deletion to verify the slice was actually removed.
- Add explicit flunk when status_payload contains 'errors' to prevent false positives from incomplete or invalid responses - Ensure test fails immediately on backend error instead of silently skipping assertions
Restore LinkedData.settings.enable_slices to its original value after tests.
…com:ncbo/ontologies_api into refactor/tests-stability-and-minitest-style
… user helpers This change refactors `TestOntologySubmissionsController` to eliminate suite-level globals and class-variable state in favor of per-test setup and shared helpers: - Replace `before_suite` + `@@acronym`/`@@name`/`@@file_params` with per-test `setup` that generates a unique ontology acronym and creates an ontology administered by a shared test user. - Introduce a suite-local `USERNAME = "test_user"` and use `ensure_user(USERNAME)` to guarantee the user exists without races. - Normalize assertion style: - Use `assert_equal(expected, actual, message)` with parentheses - Remove `msg=` pseudo-named args - Add `.sort` where appropriate when comparing unordered keys - Replace direct references to `@@acronym`/`@@name` with instance vars (`@acronym`, `@name`). New helper methods (in the base test class) used by this suite: - `create_user(username, email:, password:)` — always creates a user - `ensure_user(username, email:, password:)` — idempotently finds or creates - `delete_user(username)` — removes a user if present Notes: - `delete_ontologies_and_submissions` now runs in `setup` to guarantee a clean slate per test. `after_all` also cleans up the shared user via `delete_user(USERNAME)`. If the extra cleanup proves redundant, we can drop `before_all`/`after_all` and keep only the per-test cleanup.
…st-style Refactor/tests stability and minitest style
Develop to Master merge, Release 7.2.2
Expect the admin search collections endpoint to report the physical Solr bootstrap collections, term_search_bootstrap and property_search_bootstrap, while allowing the stable term_search and property_search aliases as additional entries.
…cbo/ontologies_api into feature/solrcloud-alias-indexing-codex
Point the API stack at the latest GOO and related Solr alias commits, including the GOO test cleanup that prevents leaked search collections from breaking API collection assertions.
Point the API stack at the latest GOO, OLD, and ncbo_cron commits for configurable Solr alias bootstrap migration.
Point API dependency locks at the OLD/ncbo_cron commits that keep the Solr alias status command read-only.
Expand user search fields
Feature: Update API search collection test for renamed Solr collections
Develop -> Master merge, release v7.3.0
Develop -> Master merge, release v7.3.1
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Sync BioPortal v6.8.0 release