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National Institute of Allergy and Infectious Diseases (NIAID)

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  1. dsb dsb Public

    Normalize CITEseq Data

    R 70 13

  2. sitk-ibex sitk-ibex Public

    Aligning images acquired with the IBEX microscopy imaging technique

    Python 20 6

  3. imaris_extensions imaris_extensions Public

    Algorithmic and Utility Extensions for the Imaris Program

    Python 20 3

  4. terraform-aws-managed-config-rules terraform-aws-managed-config-rules Public

    AWS Config Managed Rules Terraform Module

    HCL 18 10

  5. covid19-time-resolved covid19-time-resolved Public

    This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, Andrew J. Martins, William W. Lau, Nicholas Rachmaninoff, ..., …

    R 15 9

  6. virome-pipeline virome-pipeline Public

    This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.

    Python 15 1

Repositories

Showing 10 of 171 repositories
  • imaris_extensions Public

    Algorithmic and Utility Extensions for the Imaris Program

    niaid/imaris_extensions’s past year of commit activity
    Python 20 Apache-2.0 3 2 0 Updated Apr 12, 2026
  • sitk-ibex Public

    Aligning images acquired with the IBEX microscopy imaging technique

    niaid/sitk-ibex’s past year of commit activity
    Python 20 Apache-2.0 6 1 3 Updated Apr 12, 2026
  • monarch-actions-switch-account Public

    GitHub Action used to switch between Monarch Spaces accounts

    niaid/monarch-actions-switch-account’s past year of commit activity
    TypeScript 1 MIT 0 1 15 Updated Apr 9, 2026
  • Human-NGS-and-GWAS Public

    Introduction to Human Next Generation Sequencing Projects and GWAS analysis offered to ACE Mali students. GWAS demo utilizing PLinK, a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses.

    niaid/Human-NGS-and-GWAS’s past year of commit activity
    2 0 0 0 Updated Apr 8, 2026
  • ACE_Mali_2026_scRNA-seq Public

    Training materials for a hands-on single-cell RNA sequencing (scRNA-seq) tutorial, covering core analysis workflows with Seurat and automated cell type annotation using SingleR.

    niaid/ACE_Mali_2026_scRNA-seq’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 6, 2026
  • monarch-actions-key-writer Public Forked from shimataro/ssh-key-action

    Monarch GitHub Action that installs SSH key to .ssh

    niaid/monarch-actions-key-writer’s past year of commit activity
    TypeScript 0 MIT 103 0 14 Updated Apr 4, 2026
  • moleculer-netsparker-cloud Public

    Moleculer mixin for consuming Netsparker Cloud services.

    niaid/moleculer-netsparker-cloud’s past year of commit activity
    JavaScript 1 MIT 0 0 2 Updated Apr 3, 2026
  • irf-area-viral-quant Public
    niaid/irf-area-viral-quant’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 29, 2026
  • openapi-generator Public Forked from OpenAPITools/openapi-generator

    OpenAPI Generator allows generation of API client libraries (SDK generation), server stubs, documentation and configuration automatically given an OpenAPI Spec (v2, v3)

    niaid/openapi-generator’s past year of commit activity
    Java 0 Apache-2.0 7,603 0 107 Updated Mar 27, 2026
  • terraform-aws-notify-slack Public Forked from terraform-aws-modules/terraform-aws-notify-slack

    Terraform module which creates SNS topic and Lambda function which sends notifications to Slack

    niaid/terraform-aws-notify-slack’s past year of commit activity
    Python 0 Apache-2.0 349 0 1 Updated Mar 25, 2026
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