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Pull requests: nf-core/modules

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192 Open 8,389 Closed
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Pull requests list

Add new module: pridepy/downloadfile
#11753 opened May 22, 2026 by jonasscheid Contributor Loading…
11 of 13 tasks
bump bcl-convert size/s
#11749 opened May 22, 2026 by matthdsm Contributor Loading…
17 tasks
Update to topics hostile/*
#11748 opened May 22, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
Update DEEPVARIANT/* to 1.10.0
#11743 opened May 22, 2026 by awgymer Contributor Loading…
17 tasks
6
Add dotseq/dotseq
#11742 opened May 21, 2026 by pinin4fjords Member Loading…
7 tasks done
update module: fastqdl
#11741 opened May 21, 2026 by camlloyd Member • Draft
2 of 17 tasks
1
1
feat(custom): orfnormalise + orfmerge modules + orftable_fasta_gtf_buildorfcatalogue subworkflow
#11740 opened May 21, 2026 by pinin4fjords Member Loading…
5 tasks done
Add REGENIE chunked step 1 modules
#11739 opened May 21, 2026 by lyh970817 Contributor • Draft
17 of 20 tasks
feat(vcontact3): add vcontact3/prepareddatabases module
#11738 opened May 21, 2026 by olawal1001 • Draft
17 tasks
11
Add new module: savana/run Ready for Review
#11737 opened May 21, 2026 by manascripts Member Loading…
10 of 13 tasks
4
Update downsampling subworkflow to samtools coverage
#11736 opened May 21, 2026 by LouisLeNezet Contributor Loading…
17 tasks
@LouisLeNezet
swap variantbam to topic size/m
#11734 opened May 21, 2026 by SPPearce Contributor Loading…
new module: custom/bed12codonpositions Ready for Review
#11733 opened May 21, 2026 by pinin4fjords Member Loading…
4 tasks done
Update phasing and imputation sbwf
#11731 opened May 21, 2026 by LouisLeNezet Contributor Loading…
17 tasks
@LouisLeNezet
feat(simpleaf): add simpleaf/multiplexquant module
#11724 opened May 20, 2026 by an-altosian Contributor Loading…
3 tasks
Add new module: savana/classify Ready for Review
#11721 opened May 20, 2026 by manascripts Member Loading…
11 of 13 tasks
Add new module: octopusv/stat Ready for Review
#11719 opened May 20, 2026 by manascripts Member Loading…
11 of 13 tasks
2
Add new module: octopusv/svcf2vcf Ready for Review
#11718 opened May 20, 2026 by manascripts Member Loading…
11 of 13 tasks
add anvi-gen-contigs-database module Ready for Review
#11713 opened May 20, 2026 by telatin Contributor Loading…
12 of 17 tasks
1
Add samplesheetparser/diff module
#11711 opened May 20, 2026 by chaitanyakasaraneni Contributor Loading…
11 of 14 tasks
Update to topics hmtnote
#11709 opened May 19, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
Add Zarr support to scanpy/pca
#11697 opened May 19, 2026 by ehsanestaji Contributor Loading…
12 of 14 tasks
2
feat(rpbp): add 8 rpbp modules + fasta_gtf_bam_rpbp subworkflow Ready for Review size/xl
#11695 opened May 19, 2026 by pinin4fjords Member Loading…
Mobsuite typer
#11664 opened May 17, 2026 by jfy133 Member Loading…
17 tasks
1
New module: GRIMER
#11663 opened May 17, 2026 by Jonahnki Loading…
5 tasks done
1
21
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