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Update nextflow.config for improved intrinsic error rate estimation; improved false double codon mutant pre-filtering - #62

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Update nextflow.config for improved intrinsic error rate estimation; improved false double codon mutant pre-filtering#62
MaximilianStammnitz wants to merge 3 commits into
nf-core:devfrom
MaximilianStammnitz:dev

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@MaximilianStammnitz

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For improved signal-noise ratio and error rate estimation, let's go with these two default parameters:

  • min_counts = 1
  • base_qual = 40

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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 4.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@MaximilianStammnitz MaximilianStammnitz changed the title Update nextflow.config for improved intrinsic error rate estimation Update nextflow.config for improved intrinsic error rate estimation; improved false double codon mutant pre-filtering Jul 26, 2026
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