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Skills Cookbook

Lab guide for adopting agentic work and coding assistants.

View tutorials: GitHub Pages · Browse in GitHub

Tutorials

  1. Setup - Get started with OpenCode, OpenRouter, and Kimi K2.5
  2. Penguins Dataset Analysis - Data analysis example with AI
  3. Journal Club Slides - Create presentations from papers
  4. Data Portal for Single Cell Sequencing - Interactive viewer for scRNA-seq data
  5. Managing Context: Reducing Hallucinations and Run Costs - Understand context windows, context rot, PLAN.md workflow, and how to use /compact
  6. APM - Dependency manager for AI context — declare, version, and inject context modules automatically

Prerequisites

Agents

Pre-built agent configurations for specific tasks:


View on GitHub

FAQ

What security is in place about my data?

OpenRouter won't log data and has other security measures in place: OpenRouter Privacy Settings

Useful Commands

Command Description
/init Generates a CLAUDE.md file with project context and conventions
/rewind Reverts the conversation to a previous point, undoing recent actions
/resume Resumes a previous conversation session where you left off

Extra Resources

Motivation

"Nothing we do as we know it will be the same in three months"

"Code is over"

"We should be burning through a data centre's worth of credits"

  • Nathan

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Skills cookbook for agentic life sciences

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