sc_met

Single cell methylation processing for Navin Lab

Name		Name	Last commit message	Last commit date
10x_met		10x_met
cnv_src		cnv_src
deprocated_src		deprocated_src
initial_processing		initial_processing
methylation_src		methylation_src
ref		ref
.DS_Store		.DS_Store
241010_scalebio_amethyst_allsamples.md		241010_scalebio_amethyst_allsamples.md
241020_scalebio_amethyst_cellline.md		241020_scalebio_amethyst_cellline.md
241105_10xmet_231.md		241105_10xmet_231.md
241114_atrandi_met		241114_atrandi_met
241209_10xmet_nobs_test.md		241209_10xmet_nobs_test.md
241218_10xWGS_DCIS66T.md		241218_10xWGS_DCIS66T.md
250106_scalebio_summaryprocessing.md		250106_scalebio_summaryprocessing.md
250107_scalebio_cnv_processing_with_functions.md		250107_scalebio_cnv_processing_with_functions.md
250107_scalebio_summary_processing_with_functions.md		250107_scalebio_summary_processing_with_functions.md
250130_10xMET_231.md		250130_10xMET_231.md
LICENSE		LICENSE
README.md		README.md
amethyst_custom_functions.R		amethyst_custom_functions.R
cell_line_cnv_calling.md		cell_line_cnv_calling.md
copykit_custom_functions.R		copykit_custom_functions.R
dcis_cnv_calling.r		dcis_cnv_calling.r
methyltree_subclones.py		methyltree_subclones.py
nextflow.config		nextflow.config
postprocessing.lsf		postprocessing.lsf
setup.md		setup.md

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