docs(cadecon): align tutorials with convergence / palette / fit-mode changes#165
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…changes Tutorial-content pass so the in-app tutorials match the behavior shipped during the review series (#153-163). Verified: typecheck, eslint, prettier. - Theory tutorial "How does CaDecon know when to stop?" (03-theory step 11): removed the stale NOTE (the stop criterion is now finalized) and rewrote it to describe shape-space convergence — stability of the kernel's peak time and FWHM, several consecutive stable iterations (patience), and the reported kernel as the median-of-last-few-iterates consensus. Points at the Convergence Tolerance control. - Convergence panel steps now match the real ConvergencePanel tabs (Asymptote / Kernel / Distributions): basics step 7 leads with the Asymptote dashboard (the four signals that flatten); interpreting step 2 uses it as the first health check and drops the non-existent "Threshold" signal. - Interpreting step 3 documents the new degenerate-fit warning as a kernel-quality cue. - theory-figures.ts now draws with the shared colorblind-safe Okabe-Ito palette (imported from @calab/ui/chart) instead of the old D3 category10 green/orange, making the "match the dashboard palette" comment true. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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Final item of the pre-publication review series: bring the in-app CaDecon tutorials in line with the behavior shipped in #153–163. Content + figure-color changes only — verified with
tsc -b apps/cadecon, eslint, and prettier.What changed
Theory — "How does CaDecon know when to stop?" (
03-theory.tsstep 11)The step carried an explicit
NOTEthat the stop criterion was "still being finalized." It's now finalized, so I removed the note and rewrote the description to match: convergence is judged in kernel shape space — stability of the rise-to-peak time and FWHM — declared after several consecutive stable iterations, with the reported kernel = the median (consensus) of the last few iterates (which is also what guards against late drift). Mentions the Convergence Tolerance control.Convergence panel tabs (
01-basics.tsstep 7,04-interpreting.tsstep 2)Both described tabs that no longer exist ("Threshold", "Spike Eff."). Rewrote them against the real
ConvergencePaneltabs — Asymptote / Kernel / Distributions:Kernel quality (
04-interpreting.tsstep 3)Documents the new degenerate-fit warning (
⚠ n/N fits degenerate, from the #162FitModework) as a cue to raise coverage or re-tile.Theory figures (
theory-figures.ts)Now draw with the shared colorblind-safe Okabe-Ito palette imported from
@calab/ui/chart(spikes → bluish-green, cutoff → orange, kernel → reddish-purple, dropped → neutral grey) instead of the old D3 category10 green/orange — making the "match the dashboard palette" comment actually true.Verification
tsc -b apps/cadeconclean (confirms the new@calab/ui/chartimport resolves).🤖 Generated with Claude Code