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HiC-/PoreC consensus failed consistently at 7-consensus stage with both Hi-C and Pore-C/CiFi data

Status: Open.

#362 In marbl/verkko;

· txfc opened on Jun 8, 2026

The --paths option can re-run the pipeline when initial asm or input file timestamps are updated

Status: Open.

#308 In marbl/verkko;

· skoren opened on Dec 11, 2024

2 chromosomal fusions from verkko 2.2 assembly not supported by the data

Status: Open.

#294 In marbl/verkko;

· tbenavi1 opened on Oct 16, 2024

Questions related to interpretation results phased assembly.

Status: Open.

#245 In marbl/verkko;

· rfinkers opened on Apr 5, 2024

Better error reporting

Status: Open.

#228 In marbl/verkko;

· Dmitry-Antipov opened on Feb 1, 2024

Snakemake 8 compatibility

enhancementNew feature or requestNew feature or request

Status: Open.

#224 In marbl/verkko;

· tbenavi1 opened on Jan 13, 2024

·  

v2.3

Strange GFA outputs in uncompressed gfa

Status: Open.

#199 In marbl/verkko;

· skoren opened on Sep 28, 2023

·  

v2.3

Homogenize trio vs hic architecture

enhancementNew feature or requestNew feature or request

Status: Open.

#197 In marbl/verkko;

· skoren opened on Sep 28, 2023

·  

v2.3

Hi-C plus Trio on same run

enhancementNew feature or requestNew feature or request

Status: Open.

#193 In marbl/verkko;

· Dmitry-Antipov opened on Sep 15, 2023

·  

v2.3

Likely incorrect ONT-based resolution

Status: Open.

#190 In marbl/verkko;

· skoren opened on Sep 12, 2023

Potential graphaligner/resolution instability

bugSomething isn't workingSomething isn't working

Status: Open.

#176 In marbl/verkko;

· skoren opened on Jul 24, 2023

Improve coverage estimations for repeats

Status: Open.

#172 In marbl/verkko;

· Dmitry-Antipov opened on Jul 13, 2023