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Unusual --version output

Status: Open.

#117 In maickrau/GraphAligner;

· tseemann opened on Apr 12, 2026

Purpose of maxXScore and errorCost

Status: Open.

#116 In maickrau/GraphAligner;

· Marcosis2 opened on Apr 10, 2026

Recommended parameters for asm-to-unitig graph alignment

Status: Open.

#115 In maickrau/GraphAligner;

· zxzhang8 opened on Dec 23, 2025

Fatal protobuf error when providing seed file (.gam)

Status: Open.

#114 In maickrau/GraphAligner;

· IgnazioSpaccavento opened on Dec 2, 2025

what is bitvector mode ?

Status: Open.

#113 In maickrau/GraphAligner;

· shihjimmy opened on Nov 3, 2025

how can i generate a seed gam format and give it into GraphAligner ?

Status: Open.

#112 In maickrau/GraphAligner;

· shihjimmy opened on Aug 12, 2025

Assertion failure about scoreEnd vs. scoreHere in GraphAligner 1.0.20

Status: Open.

#111 In maickrau/GraphAligner;

· adamnovak opened on Jul 8, 2025

Mapping assemblies to pangenome graph

Status: Open.

#110 In maickrau/GraphAligner;

· Buuxx opened on Jul 2, 2025

How to add read quality scores back into GAM

Status: Open.

#107 In maickrau/GraphAligner;

· BaxW opened on Sep 29, 2024

GraphAligner slow on R10 reads mapped to hprc graph

Status: Open.

#106 In maickrau/GraphAligner;

· xchang1 opened on Sep 27, 2024

GraphAligner closes named pipe (feature request)

Status: Open.

#105 In maickrau/GraphAligner;

· nrizzo opened on Aug 27, 2024

Unable to reproduce alignment speed in the GraphAligner publication

Status: Open.

#104 In maickrau/GraphAligner;

· jzhang-dev opened on Aug 12, 2024