Expand patient trajectory tutorial

[lordy5]

Not ready yet. One issue I'm having is that I can't load the meta_adata anymore now that the tutorials are a submodule.

I also need to finish the analysis.

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[VladimirShitov]

Hey! Can you access meta_adata if you run git submodule update --init --recursive in the cloned directory?

If not, uou can either download meta_adata manually and set a custom path or wait until I merge the new branch with the datasets update (there will be a function to download this file).

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eroell commented on 2026-05-10T11:19:58Z
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Line #1.    #meta_adata = ep.io.read_h5ad("data/combat_meta_adata.h5ad")

Hi, this file should not be used anymore - it was before on the patpy github repository. You could still download it from an old version, but the way to go now is to do load metadata from the patpy datasets function

adata, meta_adata = patpy.datasets.combat_preprocessed(load_metadata=True)