Spiking model for "CA1 Engram Cell Dynamics Before and After Learning": https://www.biorxiv.org/content/10.1101/2024.04.16.589790v1.abstract
To make Figure 5B:
python sim_low_inhib.py
python theory_low_inhib.py
python plot_low_inhib.py
To make Figure 5C (lineplot):
python theory_specific_inhib.py
python plot_specific_inhib.py
To make the four barpliots in Figure 5 C, D, F:
python sim_vary_inhib.py
python theory_vary_inhib.py
python plot_barplots.py
To make Figure 5E:
python sim_vary_inhib.py
python theory_vary_inhib.py
python plot_correlation_ratio.py
To make Figure 5H:
python sim_low_inhib.py
python plot_noisy_tagging_heatmaps.py
To make Figure 6 C, D, E:
python reactivation.py
To make Supp Figure 6 A:
python sim_low_inhib_with_excitability.py
python theory_low_inhib_with_excitability.py
python plot_low_inhib_with_excitability.py
To make Supp Figure 6B:
python theory_vary_inhib_levels.py
python plot_decomposition.py