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chore(deps): lock file maintenance#98
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renovate/lock-file-maintenance

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@renovate renovate Bot commented Mar 30, 2026 •
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This PR contains the following updates:

Update Change
lockFileMaintenance All locks refreshed

Warning

Some dependencies could not be looked up. Check the Dependency Dashboard for more information.

🔧 This Pull Request updates lock files to use the latest dependency versions.

Configuration

📅 Schedule: (UTC)

  • Branch creation
    • Between 12:00 AM and 03:59 AM, only on Monday (* 0-3 * * 1)
  • Automerge
    • At any time (no schedule defined)

🚦 Automerge: Enabled.

♻ Rebasing: Whenever PR is behind base branch, or you tick the rebase/retry checkbox.

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This PR was generated by Mend Renovate. View the repository job log.

renovate-approve[bot]
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renovate Bot requested a review from liblaf March 30, 2026 04:45
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renovate Bot force-pushed the renovate/lock-file-maintenance branch from b8e04d5 to 6571406 Compare May 23, 2026 07:12
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@liblaf-mega-linter

liblaf-mega-linter Bot commented May 23, 2026 •
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✅⚠️MegaLinter analysis: Success with warnings

Descriptor Linter Files Fixed Errors Max errors Warnings Elapsed time
✅ BASH shellcheck 2 0 0 0.02s
✅ BASH shfmt 2 0 0 0 0.96s
⚠️ COPYPASTE jscpd yes 1241 no 7.55s
⚠️ JSON jsonlint 250 1 0 0.36s
✅ JSON prettier 250 230 0 0 13.68s
✅ JSON v8r 250 0 0 20.65s
⚠️ MARKDOWN rumdl 139 7 1 0 1.24s
⚠️ PYTHON ruff yes yes 424 no 2.03s
✅ PYTHON ruff-format yes yes no no 0.29s
✅ REPOSITORY git_diff yes no no 1.45s
⚠️ SPELL cspell 728 993 0 24.18s

Detailed Issues

⚠️ SPELL / cspell - 993 errors 
rc/15-analyze-stable-neo-hookean-resolution.py:454:45    - Unknown word (toarray)    -- -factor.solve(mixed.toarray())
	 Suggestions: [tarry, torbay, Torbay, asarray, ndarray]
exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/15-analyze-stable-neo-hookean-resolution.py:466:28    - Unknown word (lstsq)      -- projection = np.linalg.lstsq(response, target, rcond
	 Suggestions: [lats, lets, lits, lots, lstm]
exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/15-analyze-stable-neo-hookean-resolution.py:466:52    - Unknown word (rcond)      -- lstsq(response, target, rcond=relative_tolerance)
	 Suggestions: [cond, cron, crone, cronk, crons]
exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/15-analyze-stable-neo-hookean-resolution.py:566:16    - Unknown word (genfromtxt) -- np.genfromtxt(case.case_dir / "top
	 Suggestions: []
exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/15-analyze-stable-neo-hookean-resolution.py:574:16    - Unknown word (genfromtxt) -- np.genfromtxt(case.case_dir / "top
	 Suggestions: []
exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/15-analyze-stable-neo-hookean-resolution.py:758:137   - Unknown word (Ainv)       -- positive-definite symmetric Ainv on every muscle triangle
	 Suggestions: [ainu, Ainu, ain, Ain, Minv]
exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/25-render-stable-neo-hookean-resolution-analysis-paraview.py:4:34      - Unknown word (pvpython)   -- with ParaView 6.1.1's pvpython, not the project interpreter
	 Suggestions: [python, Python, cpython, ipython, PYTHON]
exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/25-render-stable-neo-hookean-resolution-analysis-paraview.py:67:65     - Unknown word (IHDR)       -- or header[12:16] != b"IHDR":
	 Suggestions: [DHDR, XHDR, hide, HIDE, HIDER]
exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/25-render-stable-neo-hookean-resolution-analysis-paraview.py:129:18    - Unknown word (ainv)       -- "min_det_ainv",
	 Suggestions: [ainu, Ainu, ain, minv, Ain]
exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/25-render-stable-neo-hookean-resolution-analysis-paraview.py:152:66    - Unknown word (ainv)       -- min_det_g", "min_det_ainv")
	 Suggestions: [ainu, Ainu, ain, minv, Ain]
exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/25-render-stable-neo-hookean-resolution-analysis-paraview.py:392:56    - Unknown word (unregularized) -- singular-value spectra (unregularized free-control map)",
	 Suggestions: [unregulated]
src/liblaf/apple/inverse/_diff_forward.py:92:9      - Unknown word (rprecondition) -- def rprecondition(self, p_free: Free)
	 Suggestions: [precondition, preCondition, PRECONDITION, recondition, rpreconditioner]
src/liblaf/apple/inverse/_diff_forward.py:99:21     - Unknown word (rprecondition) -- return self.rprecondition(p_free)
	 Suggestions: [precondition, preCondition, PRECONDITION, recondition, rpreconditioner]
src/liblaf/apple/warp/fem/__init__.pyi:4:8       - Unknown word (koiter)     -- from ._koiter import Koiter
	 Suggestions: [kiter, goiter, loiter, dotier, goitre]
src/liblaf/apple/warp/fem/__init__.pyi:4:22      - Unknown word (Koiter)     -- from ._koiter import Koiter
	 Suggestions: [Kiter, Goiter, Loiter, Dotier, Goitre]
src/liblaf/apple/warp/fem/__init__.pyi:11:6      - Unknown word (Koiter)     -- "Koiter",
	 Suggestions: [Kiter, Goiter, Loiter, Dotier, Goitre]
src/liblaf/apple/warp/fem/_koiter.py:349:16    - Unknown word (Koiter)     -- msg = "Koiter triangle rest metric
	 Suggestions: [Kiter, Goiter, Loiter, Dotier, Goitre]
src/liblaf/apple/warp/fem/_koiter.py:381:7     - Unknown word (Koiter)     -- class Koiter(WarpPotential):
	 Suggestions: [Kiter, Goiter, Loiter, Dotier, Goitre]
src/liblaf/apple/warp/fem/_koiter.py:382:64    - Unknown word (Lamé)       -- supplied effective in-plane Lamé moduli.
	 Suggestions: [Lame, Lama, lamb, Lamb, Lamp]
src/liblaf/apple/warp/fem/_koiter.py:455:19    - Unknown word (Koiter)     -- f"Koiter expects triangle cells
	 Suggestions: [Kiter, Goiter, Loiter, Dotier, Goitre]
tests/warp/test_koiter.py:136:10    - Unknown word (koiter)     -- def test_koiter_activation_conversion
	 Suggestions: [kiter, goiter, loiter, dotier, goitre]
tests/warp/test_koiter.py:138:39    - Unknown word (Koiter)     -- apple.warp.fem import Koiter
	 Suggestions: [Kiter, Goiter, Loiter, Dotier, Goitre]
tests/warp/test_koiter.py:143:14    - Unknown word (Koiter)     -- direct = Koiter.from_pyvista(_make_mesh
	 Suggestions: [Kiter, Goiter, Loiter, Dotier, Goitre]
tests/warp/test_koiter.py:144:17    - Unknown word (Koiter)     -- converted = Koiter.from_pyvista(_make_mesh
	 Suggestions: [Kiter, Goiter, Loiter, Dotier, Goitre]
tests/warp/test_koiter.py:154:10    - Unknown word (koiter)     -- def test_koiter_zero_activation_has
	 Suggestions: [kiter, goiter, loiter, dotier, goitre]
tests/warp/test_koiter.py:156:39    - Unknown word (Koiter)     -- apple.warp.fem import Koiter
	 Suggestions: [Kiter, Goiter, Loiter, Dotier, Goitre]
tests/warp/test_koiter.py:163:17    - Unknown word (Koiter)     -- potential = Koiter.from_pyvista(mesh, thickness
	 Suggestions: [Kiter, Goiter, Loiter, Dotier, Goitre]
tests/warp/test_koiter.py:174:10    - Unknown word (koiter)     -- def test_koiter_homogeneous_patch_matches
	 Suggestions: [kiter, goiter, loiter, dotier, goitre]
tests/warp/test_koiter.py:208:10    - Unknown word (koiter)     -- def test_koiter_prestrain_patch_has
	 Suggestions: [kiter, goiter, loiter, dotier, goitre]
tests/warp/test_koiter.py:239:10    - Unknown word (koiter)     -- def test_koiter_prestrain_keeps_original
	 Suggestions: [kiter, goiter, loiter, dotier, goitre]
CSpell: Files checked: 559, skipped: 169, Issues found: 993 in 191 files.


You can skip this misspellings by defining the following .cspell.json file at the root of your repository
Of course, please correct real typos before :)

{
    "version": "0.2",
    "language": "en",
    "ignorePaths": [
        "**/node_modules/**",
        "**/vscode-extension/**",
        "**/.git/**",
        "**/.pnpm-lock.json",
        ".vscode",
        "package-lock.json",
        "megalinter-reports"
    ],
    "words": [
        "Ainv",
        "Armijo",
        "Cupy",
        "Eboundary",
        "Efat",
        "Eint",
        "Emin",
        "Esmas",
        "Exponentiating",
        "Freudenthal",
        "IHDR",
        "KOITER",
        "Koiter",
        "Lam\u00e9",
        "Lres",
        "Nyquist",
        "O\u00f1ate",
        "PVBATCH",
        "RGBA",
        "Tikhonov",
        "Unreachability",
        "VTKHDF",
        "Viridis",
        "ainv",
        "atol",
        "axvline",
        "bbox",
        "bmatrix",
        "clim",
        "cmap",
        "cupy",
        "efat",
        "eigen",
        "eigenstrain",
        "evals",
        "ffprobe",
        "fftfreq",
        "frameon",
        "genfromtxt",
        "hanning",
        "imshow",
        "infty",
        "injective",
        "interp",
        "isface",
        "isfixed",
        "issubdtype",
        "koiter",
        "libx",
        "linf",
        "lstsq",
        "mathrm",
        "movflags",
        "ndimage",
        "nyquist",
        "poroelastic",
        "pvbatch",
        "pvpython",
        "rcond",
        "regularised",
        "remesh",
        "remeshed",
        "remeshing",
        "rfft",
        "rfftfreq",
        "rprecondition",
        "slugification",
        "splu",
        "toarray",
        "tobytes",
        "tris",
        "undeformed",
        "unreachability",
        "unregularized",
        "unsmoothed",
        "viridis",
        "viscoelastic",
        "vmax",
        "vmin",
        "vtkhdf",
        "vtkmodules",
        "wspace",
        "xtick",
        "xticks",
        "xytext",
        "yscale",
        "ytick",
        "zorder"
    ]
}


You can also copy-paste megalinter-reports/LINTER_DEFAULT at the root of your repository

(Truncated to last 8000 characters out of 224212)
⚠️ COPYPASTE / jscpd - 1241 errors 
ender-stable-neo-hookean-resolution-paraview.py [647:70 - 655:14] (9 lines, 70 tokens)
   exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/20-render-stable-neo-hookean-resolution-paraview.py [703:81 - 711:14]
Clone found (python)
 - exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/20-render-stable-neo-hookean-resolution-paraview.py [934:5 - 953:39] (20 lines, 108 tokens)
   exp/2026/08/24/unreachable-stable-neo-hookean-2d-resolution/src/25-render-stable-neo-hookean-resolution-analysis-paraview.py [217:5 - 236:39]
Clone found (python)
 - src/liblaf/apple/warp/fem/_arap.py [7:33 - 21:74] (15 lines, 63 tokens)
   src/liblaf/apple/warp/fem/_neo_hookean.py [7:41 - 21:74]
Clone found (python)
 - src/liblaf/apple/warp/fem/_arap.py [89:53 - 121:6] (33 lines, 187 tokens)
   src/liblaf/apple/warp/fem/_neo_hookean.py [118:55 - 150:6]
Clone found (python)
 - src/liblaf/apple/warp/fem/_base.py [116:50 - 125:50] (10 lines, 58 tokens)
   src/liblaf/apple/warp/fem/_koiter.py [471:66 - 480:50]
Clone found (python)
 - src/liblaf/apple/warp/fem/_base.py [125:50 - 134:50] (10 lines, 58 tokens)
   src/liblaf/apple/warp/fem/_koiter.py [480:66 - 489:50]
Clone found (python)
 - src/liblaf/apple/warp/fem/_base.py [134:50 - 143:53] (10 lines, 66 tokens)
   src/liblaf/apple/warp/fem/_koiter.py [489:66 - 498:53]
Clone found (python)
 - src/liblaf/apple/warp/fem/_base.py [143:53 - 152:53] (10 lines, 66 tokens)
   src/liblaf/apple/warp/fem/_koiter.py [498:69 - 507:53]
Clone found (python)
 - src/liblaf/apple/warp/fem/_base.py [166:40 - 172:70] (7 lines, 56 tokens)
   src/liblaf/apple/warp/fem/_base.py [189:37 - 195:70]
Clone found (python)
 - src/liblaf/apple/warp/fem/_base.py [166:31 - 172:70] (7 lines, 58 tokens)
   src/liblaf/apple/warp/fem/_base.py [211:31 - 217:70]
Clone found (python)
 - src/liblaf/apple/warp/fem/_base.py [166:40 - 173:54] (8 lines, 67 tokens)
   src/liblaf/apple/warp/fem/_base.py [235:36 - 242:71]
Clone found (python)
 - src/liblaf/apple/warp/fem/_base.py [167:9 - 172:70] (6 lines, 54 tokens)
   src/liblaf/apple/warp/fem/_base.py [266:9 - 271:70]
Clone found (python)
 - src/liblaf/apple/warp/fem/_base.py [191:13 - 197:19] (7 lines, 60 tokens)
   src/liblaf/apple/warp/fem/_base.py [237:13 - 243:22]
Clone found (python)
 - src/liblaf/apple/warp/fem/_base.py [262:14 - 269:67] (8 lines, 67 tokens)
   src/liblaf/apple/warp/fem/_base.py [292:14 - 299:67]
Clone found (python)
 - src/liblaf/apple/warp/fem/_base.py [296:9 - 302:70] (7 lines, 65 tokens)
   src/liblaf/apple/warp/fem/_base.py [327:9 - 333:70]
Clone found (python)
 - src/liblaf/apple/warp/fem/_koiter.py [140:6 - 168:32] (29 lines, 254 tokens)
   src/liblaf/apple/warp/fem/_koiter.py [258:6 - 279:16]
Clone found (python)
 - src/liblaf/apple/warp/fem/_koiter.py [144:32 - 149:62] (6 lines, 68 tokens)
   src/liblaf/apple/warp/fem/_koiter.py [163:28 - 168:62]
Clone found (python)
 - src/liblaf/apple/warp/fem/_koiter.py [158:17 - 170:33] (13 lines, 118 tokens)
   src/liblaf/apple/warp/fem/_koiter.py [180:22 - 192:22]
Clone found (python)
 - src/liblaf/apple/warp/fem/_koiter.py [159:6 - 168:62] (10 lines, 100 tokens)
   src/liblaf/apple/warp/fem/_koiter.py [220:6 - 229:62]
Clone found (python)
 - src/liblaf/apple/warp/fem/_koiter.py [190:53 - 195:11] (6 lines, 64 tokens)
   src/liblaf/apple/warp/fem/_koiter.py [231:25 - 236:7]
Clone found (python)
 - src/liblaf/apple/warp/fem/_koiter.py [233:7 - 242:11] (10 lines, 111 tokens)
   src/liblaf/apple/warp/fem/_koiter.py [271:7 - 280:9]
Clone found (python)
 - src/liblaf/apple/warp/fem/_neo_hookean.py [1:1 - 28:15] (28 lines, 152 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [1:1 - 28:15]
Clone found (python)
 - src/liblaf/apple/warp/fem/_neo_hookean.py [29:51 - 39:15] (11 lines, 66 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [29:58 - 39:15]
Clone found (python)
 - src/liblaf/apple/warp/fem/_neo_hookean.py [39:44 - 60:15] (22 lines, 114 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [39:47 - 60:15]
Clone found (python)
 - src/liblaf/apple/warp/fem/_neo_hookean.py [53:1 - 62:70] (10 lines, 96 tokens)
   src/liblaf/apple/warp/fem/_neo_hookean.py [74:78 - 83:70]
Clone found (python)
 - src/liblaf/apple/warp/fem/_neo_hookean.py [53:11 - 62:70] (10 lines, 92 tokens)
   src/liblaf/apple/warp/fem/_neo_hookean.py [93:14 - 102:70]
Clone found (python)
 - src/liblaf/apple/warp/fem/_neo_hookean.py [62:63 - 83:21] (22 lines, 150 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [62:22 - 83:29]
Clone found (python)
 - src/liblaf/apple/warp/fem/_neo_hookean.py [83:63 - 102:21] (20 lines, 152 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [83:22 - 102:29]
Clone found (python)
 - src/liblaf/apple/warp/fem/_neo_hookean.py [102:63 - 110:6] (9 lines, 55 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [102:22 - 110:6]
Clone found (python)
 - src/liblaf/apple/warp/fem/_neo_hookean.py [110:17 - 150:6] (41 lines, 256 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean.py [110:23 - 150:6]
Clone found (python)
 - src/liblaf/apple/warp/fem/_neo_hookean.py [116:43 - 150:6] (35 lines, 216 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [135:10 - 169:6]
Clone found (python)
 - src/liblaf/apple/warp/fem/_stable_neo_hookean.py [25:18 - 34:78] (10 lines, 83 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [27:18 - 36:78]
Clone found (python)
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [21:28 - 26:7] (6 lines, 51 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [102:36 - 108:6]
Clone found (python)
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [36:67 - 41:28] (6 lines, 52 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [57:1 - 62:28]
Clone found (python)
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [36:35 - 45:18] (10 lines, 104 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [81:46 - 92:29]
Clone found (python)
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [57:11 - 70:26] (14 lines, 98 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [103:14 - 115:35]
Clone found (python)
 - src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [86:14 - 94:12] (9 lines, 55 tokens)
   src/liblaf/apple/warp/fem/_stable_neo_hookean_active.py [108:14 - 116:12]
┌────────┬────────────────┬─────────────┬──────────────┬──────────────┬──────────────────┬───────────────────┐
│ Format │ Files analyzed │ Total lines │ Total tokens │ Clones found │ Duplicated lines │ Duplicated tokens │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ bash   │ 1              │ 38          │ 74           │ 0            │ 0 (0.00%)        │ 0 (0.00%)         │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ csv    │ 103            │ 17919       │ 665083       │ 22           │ 2972 (16.59%)    │ 94530 (14.21%)    │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ python │ 283            │ 116285      │ 730954       │ 1219         │ 27903 (24.00%)   │ 193935 (26.53%)   │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ toml   │ 5              │ 919         │ 2340         │ 0            │ 0 (0.00%)        │ 0 (0.00%)         │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ Total: │ 392            │ 135161      │ 1398451      │ 1241         │ 30875 (22.84%)   │ 288465 (20.63%)   │
└────────┴────────────────┴─────────────┴──────────────┴──────────────┴──────────────────┴───────────────────┘
Found 1241 clones.
HTML report saved to megalinter-reports/copy-paste/jscpd-report.html
ERROR: jscpd found too many duplicates (22.8%) over threshold (0.0%)
time: 2.86s

(Truncated to last 8000 characters out of 293478)
⚠️ JSON / jsonlint - 1 error 
File: exp/2026/06/17/human-face-smile-prestrain-v2/data/19-smoke-baseline-inverse-summary.json
Parse error on line 73, column 35:
..._displacement/max": NaN,      "initial_...
-----------------------^
No value found for key "initial_displacement/max"
⚠️ PYTHON / ruff - 424 errors 
opyright notice at top of file
--> src/liblaf/apple/common/__init__.pyi:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/common/_moduli.py:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/common/_potential_name.py:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/common/attr_name.py:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/forward/__init__.py:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/forward/__init__.pyi:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/forward/_builder.py:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/forward/_forward.py:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/forward/_model.py:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/forward/_problem.py:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/forward/dof_map/__init__.py:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/forward/dof_map/__init__.pyi:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/forward/dof_map/_builder.py:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/forward/dof_map/_dof_map.py:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/inverse/__init__.py:1:1

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--> src/liblaf/apple/inverse/__init__.pyi:1:1

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--> src/liblaf/apple/inverse/_diff_forward.py:1:1

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--> src/liblaf/apple/torch/fem/__init__.pyi:1:1

CPY001 Missing copyright notice at top of file
--> src/liblaf/apple/torch/fem/element/__init__.py:1:1

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--> src/liblaf/apple/torch/fem/element/__init__.pyi:1:1

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--> src/liblaf/apple/torch/fem/element/_element.py:1:1

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--> src/liblaf/apple/torch/fem/element/_tetra.py:1:1

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--> src/liblaf/apple/torch/fem/geometry/__init__.py:1:1

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--> src/liblaf/apple/torch/fem/geometry/_geometry.py:1:1

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--> src/liblaf/apple/torch/fem/geometry/_tetra.py:1:1

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--> src/liblaf/apple/torch/fem/geometry/_triangle.py:1:1

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--> src/liblaf/apple/torch/fem/quadrature/__init__.py:1:1

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--> src/liblaf/apple/torch/fem/quadrature/_scheme.py:1:1

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--> src/liblaf/apple/torch/fem/region/__init__.py:1:1

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--> src/liblaf/apple/torch/fem/region/_region.py:1:1

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--> src/liblaf/apple/warp/model/_adapter.py:1:1

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--> tests/warp/test_koiter.py:1:1

Found 424 errors.
No fixes available (43 hidden fixes can be enabled with the `--unsafe-fixes` option).

(Truncated to last 8000 characters out of 83209)
⚠️ MARKDOWN / rumdl - 1 error 
exp/2026/06/17/human-face-skin-prestrain/docs/30-lips-corners-down-volume-prestrain-rest-recovery.md:64:1: [MD060] Table columns should be aligned [fixed]
exp/2026/06/17/human-face-skin-prestrain/docs/30-lips-corners-down-volume-prestrain-rest-recovery.md:75:1: [MD060] Table columns should be aligned [fixed]
exp/2026/06/17/human-face-skin-prestrain/docs/30-lips-corners-down-volume-prestrain-rest-recovery.md:82:1: [MD060] Table columns should be aligned [fixed]
exp/2026/06/17/human-face-skin-prestrain/docs/31-uniform-5pct-isface-volume-prestrain-rest-recovery.md:53:1: [MD060] Table columns should be aligned [fixed]
exp/2026/06/17/human-face-skin-prestrain/docs/31-uniform-5pct-isface-volume-prestrain-rest-recovery.md:60:1: [MD060] Table columns should be aligned [fixed]
exp/2026/06/17/human-face-skin-prestrain/docs/31-uniform-5pct-isface-volume-prestrain-rest-recovery.md:71:1: [MD060] Table columns should be aligned [fixed]
exp/2026/06/17/human-face-skin-prestrain/docs/31-uniform-5pct-isface-volume-prestrain-rest-recovery.md:79:1: [MD060] Table columns should be aligned [fixed]
exp/2026/06/17/human-face-skin-prestrain/docs/32-uniform-5pct-isface-boundary-pullback-rest-recovery.md:60:1: [MD060] Table columns should be aligned [fixed]
exp/2026/06/17/human-face-skin-prestrain/docs/32-uniform-5pct-isface-boundary-pullback-rest-recovery.md:70:1: [MD060] Table columns should be aligned [fixed]
exp/2026/05/20/inverse-face/docs/40-transfer-activation-matrix.md:32:1: [MD060] Table columns should be aligned [fixed]
[inline config warning] exp/2026/08/18/human-face-smile-plane-stress-skin/docs/00-plane-stress-preflight.md:132:1: [MD057] Relative link '../tmp/preflight/skin-domain-overlay.png' does not exist
exp/2026/08/17/human-face-smile-material-heuristic-sweep/docs/20-material-screen-findings.md:93: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
[inline config warning] exp/2026/08/17/human-face-smile-material-heuristic-sweep/docs/20-material-screen-findings.md:124: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
[inline config warning] exp/2026/08/17/human-face-smile-material-heuristic-sweep/docs/20-material-screen-findings.md:230: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
[inline config warning] exp/2026/08/17/human-face-smile-material-heuristic-sweep/docs/20-material-screen-findings.md:258: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
exp/2026/08/18/human-face-smile-plane-stress-skin/docs/00-plane-stress-preflight.md:315:21: [MD057] Relative link '../data/10-corrected-baseline/skin-isface-e0200-p000.vtp' does not exist
[inline config warning] exp/2026/08/18/human-face-smile-plane-stress-skin/docs/15-forward-domain-conversion-probe.md:71: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
[inline config warning] exp/2026/08/18/human-face-smile-plane-stress-skin/docs/15-forward-domain-conversion-probe.md:157: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
[inline config warning] exp/2026/08/18/human-face-smile-plane-stress-skin/docs/15-forward-domain-conversion-probe.md:178: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
[inline config warning] exp/2026/08/18/human-face-smile-plane-stress-skin/docs/15-forward-domain-conversion-probe.md:194: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
exp/2026/08/19/human-face-smile-selective-skin-energy-prestrain-inverse/docs/40-selective-skin-prestrain-inverse-findings.md:156:41: [MD057] Relative link '../tmp/20-selective-skin-prestrain-smoke/' does not exist
exp/2026/08/19/human-face-smile-selective-skin-energy-prestrain-inverse/docs/40-selective-skin-prestrain-inverse-findings.md:158:44: [MD057] Relative link '../tmp/20-selective-skin-prestrain-smoke-v2/' does not exist
exp/2026/08/19/human-face-smile-selective-skin-energy-prestrain-inverse/docs/40-selective-skin-prestrain-inverse-findings.md:182:43: [MD057] Relative link '../logs/20-inverse-selective-skin-prestrain.log' does not exist
exp/2026/08/17/human-face-smile-material-heuristic-sweep/docs/20-material-screen-findings.md:369:46: [MD057] Relative link '../logs/30-analyze-material-screen.log' does not exist
exp/2026/08/18/human-face-smile-plane-stress-skin/docs/15-forward-domain-conversion-probe.md:130:10: [MD057] Relative link '../logs/15-forward-domain-conversion-probe.log' does not exist
exp/2026/08/18/human-face-smile-plane-stress-skin/docs/15-forward-domain-conversion-probe.md:131:10: [MD057] Relative link '../logs/16-analyze-domain-conversion-probe.log' does not exist
exp/2026/08/19/material-physics-group-meeting-assets/docs/10-lame-assets.md:107:13: [MD057] Relative link '../logs/10-lame-run.log' does not exist
[inline config warning] exp/2026/08/18/human-face-smile-exaggerated-material-screen/docs/10-exaggerated-material-screen.md:93: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
[inline config warning] exp/2026/08/18/human-face-smile-exaggerated-material-screen/docs/10-exaggerated-material-screen.md:134: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
[inline config warning] exp/2026/08/18/human-face-smile-exaggerated-material-screen/docs/10-exaggerated-material-screen.md:220: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
[inline config warning] exp/2026/08/18/human-face-smile-exaggerated-material-screen/docs/10-exaggerated-material-screen.md:234: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
[inline config warning] exp/2026/08/18/human-face-smile-exaggerated-material-screen/docs/10-exaggerated-material-screen.md:261: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
exp/2026/08/18/human-face-smile-plane-stress-skin/docs/20-hard-fixed-zero-step-smoke.md:40:25: [MD057] Relative link '../data/10-corrected-baseline/skin-isface-e0200-p000.vtp' does not exist
exp/2026/08/18/human-face-smile-plane-stress-skin/docs/20-hard-fixed-zero-step-smoke.md:99:31: [MD057] Relative link '../tmp/hard-fixed-smoke-v3/20-corrected-baseline-hard-fixed-smoke-summary.json' does not exist
[inline config warning] exp/2026/08/18/human-face-smile-plane-stress-skin/docs/30-corrected-baseline-screen.md:53: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
[inline config warning] exp/2026/08/18/human-face-smile-plane-stress-skin/docs/30-corrected-baseline-screen.md:120: Rule MD013 is not enabled in configuration, so the inline enable comment enabling it has no effect
exp/2026/08/19/human-face-smile-selective-skin-energy-prestrain-inverse/data/10-prepared-material-cases-table.md:2:1: [MD060] Table columns should be aligned [fixed]
exp/2026/08/19/human-face-smile-fat-floor-skin-energy-prestrain-inverse/data/10-prepared-material-cases-v2-table.md:2:1: [MD060] Table columns should be aligned [fixed]
exp/2026/08/19/human-face-smile-fixed-activation-prestrain-replay/docs/20-fixed-activation-prestrain-replay-findings.md:125:26: [MD057] Relative link '../logs/10-fixed-activation-prestrain-replay.log' does not exist
exp/2026/08/19/human-face-smile-fixed-activation-prestrain-replay/docs/20-fixed-activation-prestrain-replay-findings.md:126:16: [MD057] Relative link '../logs/20-analyze-fixed-activation-prestrain-replay.log' does not exist
exp/2026/08/19/human-face-smile-fat-floor-skin-energy-prestrain-inverse/data/10-prepared-material-cases-table.md:2:1: [MD060] Table columns should be aligned [fixed]

Fixed: Fixed 13/26 issues in 7 files (210ms)

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