liblaf · pre-commit-ci · Aug 31, 2026 · Aug 31, 2026
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -18,18 +18,18 @@ ci:
 
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.16
+    rev: v0.16.5
     hooks:
       - id: ruff-check
         args:
           - --fix
       - id: ruff-format
   - repo: https://github.com/oxc-project/mirrors-oxfmt
-    rev: v0.54.0
+    rev: v0.65.0
     hooks:
       - id: oxfmt
   - repo: https://github.com/oxc-project/mirrors-oxlint
-    rev: v1.69.0
+    rev: v1.60.0
     hooks:
       - id: oxlint
   - repo: https://github.com/pre-commit/pre-commit-hooks
@@ -52,10 +52,10 @@ repos:
     hooks:
       - id: actionlint
   - repo: https://github.com/rvben/rumdl-pre-commit
-    rev: v0.2.10
+    rev: v0.2.62
     hooks:
       - id: rumdl-fmt
   - repo: https://github.com/shellcheck-py/shellcheck-py
-    rev: v0.11.0.1
+    rev: v0.11.0.1-1
     hooks:
       - id: shellcheck
diff --git a/...1/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-easy-metrics.json b/...1/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-easy-metrics.json
@@ -26,4 +26,4 @@
     "forward_best_objective": 1481.1424852869957,
     "finite_outputs": true
   }
-]
+]
diff --git a/exp/2026/01/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-easy.json b/exp/2026/01/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-easy.json
@@ -38,4 +38,4 @@
     "adjoint-relative-residual": "/home/liblaf/github/liblaf/apple/exp/2026/01/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-easy-metrics-adjoint-relative-residual.png",
     "inverse-grad-absolute": "/home/liblaf/github/liblaf/apple/exp/2026/01/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-easy-metrics-inverse-grad-absolute.png"
   }
-}
+}
diff --git a/...1/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-zero-metrics.json b/...1/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-zero-metrics.json
@@ -404,4 +404,4 @@
     "forward_best_objective": 1485.5675728610533,
     "finite_outputs": true
   }
-]
+]
diff --git a/exp/2026/01/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-zero.json b/exp/2026/01/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-zero.json
@@ -43,4 +43,4 @@
     "adjoint-relative-residual": "/home/liblaf/github/liblaf/apple/exp/2026/01/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-zero-metrics-adjoint-relative-residual.png",
     "inverse-grad-absolute": "/home/liblaf/github/liblaf/apple/exp/2026/01/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean-zero-metrics-inverse-grad-absolute.png"
   }
-}
+}
diff --git a/exp/2026/01/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean.json b/exp/2026/01/28/smas/data/31-inverse-smas46-muscle46-activation-stable-neo-hookean.json
@@ -88,4 +88,4 @@
       }
     }
   ]
-}
+}
diff --git a/exp/2026/05/20/inverse-face/data/20-inverse-face-3152k-summary.json b/exp/2026/05/20/inverse-face/data/20-inverse-face-3152k-summary.json
@@ -136,4 +136,4 @@
   "repeated/forward_failure": false,
   "repeated/adjoint_failure": false,
   "passed": true
-}
+}
diff --git a/.../inverse-face/data/20-inverse-face-fresh-nu049-smas1-noclamp-super-loose-reg-summary.json b/.../inverse-face/data/20-inverse-face-fresh-nu049-smas1-noclamp-super-loose-reg-summary.json
@@ -16721,4 +16721,4 @@
   "repeated/forward_failure": false,
   "repeated/adjoint_failure": false,
   "passed": true
-}
+}
diff --git a/exp/2026/05/20/inverse-face/data/20-inverse-face-summary.json b/exp/2026/05/20/inverse-face/data/20-inverse-face-summary.json
@@ -125,4 +125,4 @@
   "repeated/forward_failure": false,
   "repeated/adjoint_failure": false,
   "passed": true
-}
+}
diff --git a/exp/2026/05/20/inverse-face/data/30-transfer-activation-3152k-summary.json b/exp/2026/05/20/inverse-face/data/30-transfer-activation-3152k-summary.json
@@ -57,4 +57,4 @@
   "forward/line_search_steps": 0,
   "forward/stagnation_count": 0,
   "time/forward_s": 16.038381466001738
-}
+}
diff --git a/exp/2026/05/20/inverse-face/data/31-transfer-activation-3152k-smas1-summary.json b/exp/2026/05/20/inverse-face/data/31-transfer-activation-3152k-smas1-summary.json
@@ -57,4 +57,4 @@
   "forward/line_search_steps": 0,
   "forward/stagnation_count": 0,
   "time/forward_s": 6.737611743999878
-}
+}
diff --git a/exp/2026/05/20/inverse-face/data/40-transfer-activation-515k-smas100-summary.json b/exp/2026/05/20/inverse-face/data/40-transfer-activation-515k-smas100-summary.json
@@ -57,4 +57,4 @@
   "forward/line_search_steps": 0,
   "forward/stagnation_count": 0,
   "time/forward_s": 3.82475233200239
-}
+}
diff --git a/exp/2026/05/20/inverse-face/data/41-transfer-activation-515k-smas1-summary.json b/exp/2026/05/20/inverse-face/data/41-transfer-activation-515k-smas1-summary.json
@@ -57,4 +57,4 @@
   "forward/line_search_steps": 0,
   "forward/stagnation_count": 0,
   "time/forward_s": 3.6330396700068377
-}
+}
diff --git a/exp/2026/05/20/inverse-face/data/42-transfer-activation-3152k-smas100-summary.json b/exp/2026/05/20/inverse-face/data/42-transfer-activation-3152k-smas100-summary.json
@@ -57,4 +57,4 @@
   "forward/line_search_steps": 0,
   "forward/stagnation_count": 0,
   "time/forward_s": 4.520490328024607
-}
+}
diff --git a/exp/2026/05/20/inverse-face/data/43-transfer-activation-3152k-smas1-summary.json b/exp/2026/05/20/inverse-face/data/43-transfer-activation-3152k-smas1-summary.json
@@ -57,4 +57,4 @@
   "forward/line_search_steps": 0,
   "forward/stagnation_count": 0,
   "time/forward_s": 6.646797652996611
-}
+}
diff --git a/exp/2026/05/20/inverse-face/docs/40-transfer-activation-matrix.md b/exp/2026/05/20/inverse-face/docs/40-transfer-activation-matrix.md
@@ -29,7 +29,7 @@ The four concrete cases were:
 ## Results
 
 | case | cells | active tets | steps | target mean cm | target RMS cm | target max cm | all RMS cm | all max cm | forward s |
-|---|---:|---:|---:|---:|---:|---:|---:|---:|---:|
+| --- | ---: | ---: | ---: | ---: | ---: | ---: | ---: | ---: | ---: |
 | 515k, SMAS 100 | 253876 | 58494 | 421 | 0.422151 | 0.475055 | 1.297573 | 0.368954 | 9.127733 | 3.825 |
 | 515k, SMAS 1 | 253876 | 58494 | 244 | 0.274502 | 0.318913 | 0.942866 | 0.243835 | 1.195187 | 3.633 |
 | 3152k, SMAS 100 | 1127541 | 283391 | 82 | 0.242941 | 0.309361 | 1.033624 | 0.200444 | 3.558038 | 4.520 |

diff --git a/exp/2026/05/27/forward-face/data/20-forward-face-3152k-a087-summary.json b/exp/2026/05/27/forward-face/data/20-forward-face-3152k-a087-summary.json
@@ -56,4 +56,4 @@
   "IsLipBottom/target_rms": 0.3993310920970844,
   "IsLipBottom/target_max": 1.0284059764202034,
   "IsLipBottom/rms_ratio_to_target": 0.30975080437456287
-}
+}
diff --git a/exp/2026/05/27/forward-face/data/20-forward-face-3152k-expr001-smas100-rerun-summary.json b/exp/2026/05/27/forward-face/data/20-forward-face-3152k-expr001-smas100-rerun-summary.json
@@ -57,4 +57,4 @@
   "IsLipBottom/target_rms": 0.5516204314457805,
   "IsLipBottom/target_max": 1.2535219973603913,
   "IsLipBottom/rms_ratio_to_target": 0.27845097750790243
-}
+}
diff --git a/exp/2026/05/27/forward-face/data/20-forward-face-3152k-expr001-smas100-summary.json b/exp/2026/05/27/forward-face/data/20-forward-face-3152k-expr001-smas100-summary.json
@@ -57,4 +57,4 @@
   "IsLipBottom/target_rms": 0.5516204314457805,
   "IsLipBottom/target_max": 1.2535219973603913,
   "IsLipBottom/rms_ratio_to_target": 0.2790818390528039
-}
+}
diff --git a/exp/2026/05/27/forward-face/data/20-forward-face-3152k-summary.json b/exp/2026/05/27/forward-face/data/20-forward-face-3152k-summary.json
@@ -56,4 +56,4 @@
   "IsLipBottom/target_rms": 0.3993310920970844,
   "IsLipBottom/target_max": 1.0284059764202034,
   "IsLipBottom/rms_ratio_to_target": 0.3094006908630162
-}
+}
diff --git a/exp/2026/05/27/forward-face/data/20-forward-face-515k-nosmas-summary.json b/exp/2026/05/27/forward-face/data/20-forward-face-515k-nosmas-summary.json
@@ -57,4 +57,4 @@
   "IsLipBottom/target_rms": 0.42244197929946425,
   "IsLipBottom/target_max": 1.016519397545366,
   "IsLipBottom/rms_ratio_to_target": 0.12364134545496203
-}
+}
diff --git a/...5/27/forward-face/data/30-inverse-face-3152k-expr001-smas100-activation-only-summary.json b/...5/27/forward-face/data/30-inverse-face-3152k-expr001-smas100-activation-only-summary.json
@@ -145,4 +145,4 @@
   "activation_inv/error_rms": 2.3418743890439707e-07,
   "activation_inv/error_max_norm": 7.913257834049561e-07,
   "passed": true
-}
+}
diff --git a/...5/27/forward-face/data/30-inverse-face-3152k-expr001-smas100-diag-warm-state-summary.json b/...5/27/forward-face/data/30-inverse-face-3152k-expr001-smas100-diag-warm-state-summary.json
@@ -399,4 +399,4 @@
   "activation_inv/error_rms": 0.0715948619403249,
   "activation_inv/error_max_norm": 0.17537109179907334,
   "passed": false
-}
+}
diff --git a/exp/2026/05/27/forward-face/data/30-inverse-face-515k-nosmas-summary.json b/exp/2026/05/27/forward-face/data/30-inverse-face-515k-nosmas-summary.json
@@ -4974,4 +4974,4 @@
   "activation_inv/error_rms": 0.2491769718442089,
   "activation_inv/error_max_norm": 0.6141888156955176,
   "passed": true
-}
+}
diff --git a/exp/2026/05/27/inverse-face/data/20-inverse-face-3152k-summary.json b/exp/2026/05/27/inverse-face/data/20-inverse-face-3152k-summary.json
@@ -8190,4 +8190,4 @@
   "repeated/forward_failure": false,
   "repeated/adjoint_failure": false,
   "passed": true
-}
+}
diff --git a/exp/2026/06/10/human-face-inverse-activation/data/10-human-face-prepared-summary.json b/exp/2026/06/10/human-face-inverse-activation/data/10-human-face-prepared-summary.json
@@ -29,4 +29,4 @@
   "volume/fat": 0.0017507733994702207,
   "volume/muscle": 0.00039386254501003594,
   "volume/total": 0.0021975124039796358
-}
+}
diff --git a/...06/10/human-face-inverse-activation/data/20-human-face-smile-lr03-cont1-d2e8-summary.json b/...06/10/human-face-inverse-activation/data/20-human-face-smile-lr03-cont1-d2e8-summary.json
@@ -1323,4 +1323,4 @@
   "volume/fat": 0.0017507733994702207,
   "volume/muscle": 0.00039386254501003594,
   "volume/total": 0.0021975124039796358
-}
+}
diff --git a/exp/2026/06/10/human-face-inverse-activation/data/20-human-face-smile-lr03-summary.json b/exp/2026/06/10/human-face-inverse-activation/data/20-human-face-smile-lr03-summary.json
@@ -3008,4 +3008,4 @@
   "volume/fat": 0.0017507733994702207,
   "volume/muscle": 0.00039386254501003594,
   "volume/total": 0.0021975124039796358
-}
+}
diff --git a/exp/2026/06/10/human-face-inverse-activation/data/20-inverse-summary.json b/exp/2026/06/10/human-face-inverse-activation/data/20-inverse-summary.json
@@ -1332,4 +1332,4 @@
   "inverse/lr": 0.3,
   "inverse/max_steps": 80,
   "target/requested": "smile"
-}
+}
diff --git a/exp/2026/06/10/unreachable-toy-parabolic-skin-tetwild/data/10-meshes/lr001/summary.json b/exp/2026/06/10/unreachable-toy-parabolic-skin-tetwild/data/10-meshes/lr001/summary.json
@@ -43,4 +43,4 @@
   "volume/fat": 0.13329921086861263,
   "volume/muscle": 0.0017756840189898041,
   "volume/total": 0.15316865449508538
-}
+}
diff --git a/...prestrain5/20-toy-tetwild-squash-lr001-l2-skin-prestrain5-activation-per_tet-summary.json b/...prestrain5/20-toy-tetwild-squash-lr001-l2-skin-prestrain5-activation-per_tet-summary.json
@@ -1656,4 +1656,4 @@
   "volume/fat": 0.13329921086861263,
   "volume/muscle": 0.0017756840189898041,
   "volume/total": 0.15316865449508538
-}
+}
diff --git a/.../unreachable-toy-parabolic-skin-tetwild/data/20-squash-lr001/skin-prestrain5/summary.json b/.../unreachable-toy-parabolic-skin-tetwild/data/20-squash-lr001/skin-prestrain5/summary.json
@@ -1660,4 +1660,4 @@
       "volume/total": 0.15316865449508538
     }
   ]
-}
+}
diff --git a/...train5-lr1/20-toy-tetwild-squash-lr001-l2-skin-prestrain5-activation-per_tet-summary.json b/...train5-lr1/20-toy-tetwild-squash-lr001-l2-skin-prestrain5-activation-per_tet-summary.json
@@ -1656,4 +1656,4 @@
   "volume/fat": 0.13329921086861263,
   "volume/muscle": 0.0017756840189898041,
   "volume/total": 0.15316865449508538
-}
+}
diff --git a/...eachable-toy-parabolic-skin-tetwild/data/21-squash-lr001/skin-prestrain5-lr1/summary.json b/...eachable-toy-parabolic-skin-tetwild/data/21-squash-lr001/skin-prestrain5-lr1/summary.json
@@ -1660,4 +1660,4 @@
       "volume/total": 0.15316865449508538
     }
   ]
-}
+}
diff --git a/...rain5-lr02/20-toy-tetwild-squash-lr001-l2-skin-prestrain5-activation-per_tet-summary.json b/...rain5-lr02/20-toy-tetwild-squash-lr001-l2-skin-prestrain5-activation-per_tet-summary.json
@@ -1656,4 +1656,4 @@
   "volume/fat": 0.13329921086861263,
   "volume/muscle": 0.0017756840189898041,
   "volume/total": 0.15316865449508538
-}
+}
diff --git a/...le-toy-parabolic-skin-tetwild/data/22-squash-lr001/skin-e005-prestrain5-lr02/summary.json b/...le-toy-parabolic-skin-tetwild/data/22-squash-lr001/skin-e005-prestrain5-lr02/summary.json
@@ -1660,4 +1660,4 @@
       "volume/total": 0.15316865449508538
     }
   ]
-}
+}
diff --git a/...in10-lr02/20-toy-tetwild-squash-lr001-l2-skin-prestrain10-activation-per_tet-summary.json b/...in10-lr02/20-toy-tetwild-squash-lr001-l2-skin-prestrain10-activation-per_tet-summary.json
@@ -1656,4 +1656,4 @@
   "volume/fat": 0.13329921086861263,
   "volume/muscle": 0.0017756840189898041,
   "volume/total": 0.15316865449508538
-}
+}
diff --git a/...e-toy-parabolic-skin-tetwild/data/23-squash-lr001/skin-e020-prestrain10-lr02/summary.json b/...e-toy-parabolic-skin-tetwild/data/23-squash-lr001/skin-e020-prestrain10-lr02/summary.json
@@ -1660,4 +1660,4 @@
       "volume/total": 0.15316865449508538
     }
   ]
-}
+}
diff --git a/exp/2026/06/10/unreachable-toy-skin-tetwild/data/10-meshes/lr0005/summary.json b/exp/2026/06/10/unreachable-toy-skin-tetwild/data/10-meshes/lr0005/summary.json
@@ -26,4 +26,4 @@
   "volume/fat": 0.0799493036484506,
   "volume/muscle": 0.002002171921340503,
   "volume/total": 0.09997023902706675
-}
+}
diff --git a/exp/2026/06/10/unreachable-toy-skin-tetwild/data/10-meshes/lr001/summary.json b/exp/2026/06/10/unreachable-toy-skin-tetwild/data/10-meshes/lr001/summary.json
@@ -26,4 +26,4 @@
   "volume/fat": 0.0795857757649098,
   "volume/muscle": 0.0020367889498087207,
   "volume/total": 0.10000234115417504
-}
+}
diff --git a/...seline/20-toy-tetwild-squash-lr0005-l2-no_skin-prestrain0-activation-per_tet-summary.json b/...seline/20-toy-tetwild-squash-lr0005-l2-no_skin-prestrain0-activation-per_tet-summary.json
@@ -883,4 +883,4 @@
   "volume/fat": 0.0799493036484506,
   "volume/muscle": 0.002002171921340503,
   "volume/total": 0.09997023902706675
-}
+}
diff --git a/exp/2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr0005/baseline/summary.json b/exp/2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr0005/baseline/summary.json
@@ -887,4 +887,4 @@
       "volume/total": 0.09997023902706675
     }
   ]
-}
+}
diff --git a/...restrain/20-toy-tetwild-squash-lr0005-l2-skin-prestrain10-activation-per_tet-summary.json b/...restrain/20-toy-tetwild-squash-lr0005-l2-skin-prestrain10-activation-per_tet-summary.json
@@ -883,4 +883,4 @@
   "volume/fat": 0.0799493036484506,
   "volume/muscle": 0.002002171921340503,
   "volume/total": 0.09997023902706675
-}
+}
diff --git a/...2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr0005/skin-prestrain/summary.json b/...2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr0005/skin-prestrain/summary.json
@@ -887,4 +887,4 @@
       "volume/total": 0.09997023902706675
     }
   ]
-}
+}
diff --git a/...0005/skin/20-toy-tetwild-squash-lr0005-l2-skin-prestrain0-activation-per_tet-summary.json b/...0005/skin/20-toy-tetwild-squash-lr0005-l2-skin-prestrain0-activation-per_tet-summary.json
@@ -883,4 +883,4 @@
   "volume/fat": 0.0799493036484506,
   "volume/muscle": 0.002002171921340503,
   "volume/total": 0.09997023902706675
-}
+}
diff --git a/exp/2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr0005/skin/summary.json b/exp/2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr0005/skin/summary.json
@@ -887,4 +887,4 @@
       "volume/total": 0.09997023902706675
     }
   ]
-}
+}
diff --git a/exp/2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr0005/summary.json b/exp/2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr0005/summary.json
@@ -2673,4 +2673,4 @@
   "mode": "squash",
   "observed/n_cases": 3,
   "observed/n_expected_cases": 3
-}
+}
diff --git a/...aseline/20-toy-tetwild-squash-lr001-l2-no_skin-prestrain0-activation-per_tet-summary.json b/...aseline/20-toy-tetwild-squash-lr001-l2-no_skin-prestrain0-activation-per_tet-summary.json
@@ -957,4 +957,4 @@
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   "volume/muscle": 0.0020367889498087207,
   "volume/total": 0.10000234115417504
-}
+}
diff --git a/exp/2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr001/baseline/summary.json b/exp/2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr001/baseline/summary.json
@@ -961,4 +961,4 @@
       "volume/total": 0.10000234115417504
     }
   ]
-}
+}
diff --git a/...prestrain/20-toy-tetwild-squash-lr001-l2-skin-prestrain10-activation-per_tet-summary.json b/...prestrain/20-toy-tetwild-squash-lr001-l2-skin-prestrain10-activation-per_tet-summary.json
@@ -883,4 +883,4 @@
   "volume/fat": 0.0795857757649098,
   "volume/muscle": 0.0020367889498087207,
   "volume/total": 0.10000234115417504
-}
+}
diff --git a/exp/2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr001/skin-prestrain/summary.json b/exp/2026/06/10/unreachable-toy-skin-tetwild/data/20-squash-lr001/skin-prestrain/summary.json
@@ -887,4 +887,4 @@
       "volume/total": 0.10000234115417504
     }
   ]
-}
+}
diff --git a/...lr001/skin/20-toy-tetwild-squash-lr001-l2-skin-prestrain0-activation-per_tet-summary.json b/...lr001/skin/20-toy-tetwild-squash-lr001-l2-skin-prestrain0-activation-per_tet-summary.json
@@ -957,4 +957,4 @@
   "volume/fat": 0.0795857757649098,
   "volume/muscle": 0.0020367889498087207,
   "volume/total": 0.10000234115417504
-}
+}
-Original file line number
+Diff line change
@@ Expand Up / @@ -26,4 +26,4 @@ @@
         "forward_best_objective": 1481.1424852869957,
         "finite_outputs": true
       }
-    ]
+    ]