lgreco · lgreco · Jan 6, 2025 · Jan 6, 2025 · Jan 6, 2025 · Jan 6, 2025
diff --git a/.DS_Store b/.DS_Store
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diff --git a/.doctrees/COMP397/introduction.doctree b/.doctrees/COMP397/introduction.doctree
diff --git a/.doctrees/COMP397/notes.doctree b/.doctrees/COMP397/notes.doctree
diff --git a/.doctrees/COMP397/notes/algorithms.doctree b/.doctrees/COMP397/notes/algorithms.doctree
diff --git a/.doctrees/COMP397/notes/first6weeks.doctree b/.doctrees/COMP397/notes/first6weeks.doctree
diff --git a/.doctrees/COMP397/notes/induction.doctree b/.doctrees/COMP397/notes/induction.doctree
diff --git a/.doctrees/COMP397/notes/proofs.doctree b/.doctrees/COMP397/notes/proofs.doctree
diff --git a/.doctrees/COMP397/notes/sets.doctree b/.doctrees/COMP397/notes/sets.doctree
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diff --git a/.doctrees/COMP397/reading.doctree b/.doctrees/COMP397/reading.doctree
diff --git a/.doctrees/COMP460/2020Fall/week1011.doctree b/.doctrees/COMP460/2020Fall/week1011.doctree
diff --git a/.doctrees/COMP460/2020Fall/week12.doctree b/.doctrees/COMP460/2020Fall/week12.doctree
diff --git a/.doctrees/COMP460/2020Fall/week2.doctree b/.doctrees/COMP460/2020Fall/week2.doctree
diff --git a/.doctrees/COMP460/2020Fall/week3.doctree b/.doctrees/COMP460/2020Fall/week3.doctree
diff --git a/.doctrees/COMP460/2020Fall/week4.doctree b/.doctrees/COMP460/2020Fall/week4.doctree
diff --git a/.doctrees/COMP460/2020Fall/week6.doctree b/.doctrees/COMP460/2020Fall/week6.doctree
diff --git a/.doctrees/COMP460/2020Fall/week789.doctree b/.doctrees/COMP460/2020Fall/week789.doctree
diff --git a/.doctrees/COMP460/2020Fall/weeklyReviews.doctree b/.doctrees/COMP460/2020Fall/weeklyReviews.doctree
diff --git a/.doctrees/COMP460/detailedOutline.doctree b/.doctrees/COMP460/detailedOutline.doctree
diff --git a/.doctrees/COMP460/introduction.doctree b/.doctrees/COMP460/introduction.doctree
diff --git a/.doctrees/COMP460/notes.doctree b/.doctrees/COMP460/notes.doctree
diff --git a/.doctrees/COMP460/notes/algorithms.doctree b/.doctrees/COMP460/notes/algorithms.doctree
diff --git a/.doctrees/COMP460/notes/first6weeks.doctree b/.doctrees/COMP460/notes/first6weeks.doctree
diff --git a/.doctrees/COMP460/notes/induction.doctree b/.doctrees/COMP460/notes/induction.doctree
diff --git a/.doctrees/COMP460/notes/proofs.doctree b/.doctrees/COMP460/notes/proofs.doctree
diff --git a/.doctrees/COMP460/notes/recursionTrees.doctree b/.doctrees/COMP460/notes/recursionTrees.doctree
diff --git a/.doctrees/COMP460/notes/sets.doctree b/.doctrees/COMP460/notes/sets.doctree
diff --git a/.doctrees/COMP460/organization.doctree b/.doctrees/COMP460/organization.doctree
diff --git a/.doctrees/COMP460/outcomes.doctree b/.doctrees/COMP460/outcomes.doctree
diff --git a/.doctrees/COMP460/reading.doctree b/.doctrees/COMP460/reading.doctree
diff --git a/.doctrees/COMP460/textbook.doctree b/.doctrees/COMP460/textbook.doctree
diff --git a/.doctrees/DBD/introduction.doctree b/.doctrees/DBD/introduction.doctree
diff --git a/.doctrees/DEI/DEI.doctree b/.doctrees/DEI/DEI.doctree
diff --git a/.doctrees/HONR204/detailedOutline.doctree b/.doctrees/HONR204/detailedOutline.doctree
diff --git a/.doctrees/HONR204/introduction.doctree b/.doctrees/HONR204/introduction.doctree
diff --git a/.doctrees/HONR204/notes.doctree b/.doctrees/HONR204/notes.doctree
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diff --git a/.doctrees/HONR204/reading.doctree b/.doctrees/HONR204/reading.doctree
diff --git a/.doctrees/HONR204/textbook.doctree b/.doctrees/HONR204/textbook.doctree
diff --git a/.doctrees/LeoIrakliotis.doctree b/.doctrees/LeoIrakliotis.doctree
diff --git a/.doctrees/RecommendationLetters.doctree b/.doctrees/RecommendationLetters.doctree
diff --git a/.doctrees/Top10.doctree b/.doctrees/Top10.doctree
diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
diff --git a/.doctrees/index.doctree b/.doctrees/index.doctree
diff --git a/.doctrees/mainSequence/introduction.doctree b/.doctrees/mainSequence/introduction.doctree
diff --git a/.doctrees/shared/COVID19.doctree b/.doctrees/shared/COVID19.doctree
diff --git a/.doctrees/shared/DEI_statement.doctree b/.doctrees/shared/DEI_statement.doctree
diff --git a/.doctrees/shared/academicIntegrity.doctree b/.doctrees/shared/academicIntegrity.doctree
diff --git a/.doctrees/shared/assignments.doctree b/.doctrees/shared/assignments.doctree
diff --git a/.doctrees/shared/attendance.doctree b/.doctrees/shared/attendance.doctree
diff --git a/.doctrees/shared/courseOutline.doctree b/.doctrees/shared/courseOutline.doctree
diff --git a/.doctrees/shared/deadlines.doctree b/.doctrees/shared/deadlines.doctree
diff --git a/.doctrees/shared/expectations.doctree b/.doctrees/shared/expectations.doctree
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diff --git a/.doctrees/shared/gradeScale.doctree b/.doctrees/shared/gradeScale.doctree
diff --git a/.doctrees/shared/grading.doctree b/.doctrees/shared/grading.doctree
diff --git a/.doctrees/shared/groundRules.doctree b/.doctrees/shared/groundRules.doctree
diff --git a/.doctrees/shared/inClassAssignments.doctree b/.doctrees/shared/inClassAssignments.doctree
diff --git a/.doctrees/shared/leo.doctree b/.doctrees/shared/leo.doctree
diff --git a/.doctrees/shared/makeUp.doctree b/.doctrees/shared/makeUp.doctree
diff --git a/.doctrees/shared/old-covid-stuff.doctree b/.doctrees/shared/old-covid-stuff.doctree
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diff --git a/.doctrees/syllabus_template/instructor_information.doctree b/.doctrees/syllabus_template/instructor_information.doctree
diff --git a/.doctrees/syllabus_template/template.doctree b/.doctrees/syllabus_template/template.doctree
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diff --git a/.doctrees/syllabus_template/template_course.doctree b/.doctrees/syllabus_template/template_course.doctree
diff --git a/.github/workflows/sphinx.yml b/.github/workflows/sphinx.yml
@@ -1,26 +1,133 @@
-#
-# Action to build and publish Leo's Course Documentation Project.
-# This action launces on GitHub, checks out the main brach (immediately
-# after a push), builds the sphinx documents into an html tree,
-# and deploys the html content on the gh-pages.
-# 
-# Leo Irakliotis - lgreco@gmail.com
-#
-
-on: [push]
-jobs:
-    build-and-publish-cdp:
-        runs-on: ubuntu-latest
-        steps:
-            - uses: actions/checkout@v2 # checkout gh-pages branch
-              with:
-                ref: gh-pages
-            - run: git config --global user.email "lgreco@gmail.com"
-            - run: git config --global user.name "Leo Irakliotis"
-            - run: pip install sphinx
-            - run: pip install sphinx-rtd-theme
-            - run: pip install sphinxcontrib.gist
-            - run: sphinx-build -b html docs/source . 
-            - run: git add .
-            - run: git commit -m "Auto deployment"
-            - run: git push
+name: Build and publish course documentation
+
+# WHEN THIS RUNS
+# ---------------
+# 1. Automatically on every push to the gh-pages branch (where both the RST
+#    source and the built HTML live together).
+# 2. Manually from the GitHub Actions tab ("Run workflow" button) via
+#    workflow_dispatch — useful for forcing a rebuild without changing any file.
+#
+# WHAT IT DOES
+# ------------
+# Checks out gh-pages, installs Sphinx, builds the HTML tree from
+# docs/source/ into the repo root, then commits the output back to gh-pages.
+# The commit message contains "[skip ci]" so GitHub Actions does not
+# re-trigger this workflow on the auto-commit (which would create an
+# infinite loop).
+
+on:
+  push:
+    branches: [gh-pages]
+  workflow_dispatch:
+
+# The workflow writes back to the repo (auto-commit of built HTML),
+# so it needs write access to contents.
+permissions:
+  contents: write
+
+# If two pushes land in quick succession, queue the second run rather than
+# cancelling it. cancel-in-progress: false ensures no build is silently
+# dropped; the second run simply waits for the first to finish.
+concurrency:
+  group: gh-pages-deploy
+  cancel-in-progress: false
+
+jobs:
+  build-and-publish-cdp:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out gh-pages branch
+        uses: actions/checkout@v4
+        with:
+          # gh-pages is the working branch — source RST and built HTML both
+          # live here. Do not switch to main; main is essentially unused.
+          ref: gh-pages
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          # Pinned to 3.12 (not '3.x') to avoid breakage when GitHub bumps
+          # the default to a newer Python release. 3.12 is an LTS-style release
+          # with long support and is known-good with all dependencies here.
+          python-version: '3.12'
+          # Cache the pip download cache between runs so repeated builds do not
+          # re-download the same wheels.
+          cache: 'pip'
+
+      - name: Install dependencies
+        run: |
+          # Install Sphinx and the Sphinx Book Theme normally.
+          # Both ship as pre-built wheels so there is no compilation step.
+          pip install "Sphinx>=7.0" "sphinx-book-theme>=1.0"
+
+          # --- sphinxcontrib-gist: manual install workaround ---
+          #
+          # sphinxcontrib-gist is an unmaintained package (last release 2017).
+          # Its setup.py does two things that break all modern pip install paths:
+          #
+          #   1. sphinxcontrib/__init__.py calls
+          #        __import__('pkg_resources').declare_namespace(__name__)
+          #      pkg_resources is part of setuptools, but setuptools 71+ no
+          #      longer exposes it inside pip's isolated build subprocess.
+          #
+          #   2. setup.py imports sphinxcontrib.gist to read __version__,
+          #      but the package is not yet installed at build time.  pip's
+          #      isolated build environment already has the sphinxcontrib
+          #      namespace (from Sphinx's own dependencies) but without the
+          #      gist subpackage, so the import fails.
+          #
+          # Even pip download triggers metadata resolution which runs the
+          # build hook, so we cannot use pip at all for this package.
+          #
+          # SOLUTION: fetch the source tarball directly from PyPI via Python's
+          # built-in urllib (no pip, no build hooks), extract it, and copy the
+          # gist/ subpackage straight into the sphinxcontrib namespace directory
+          # in site-packages.  Sphinx only needs the module to be importable —
+          # it does not care whether pip has a registration record for it.
+          #
+          # If sphinxcontrib-gist is ever replaced or the RST files stop using
+          # the .. gist:: directive, this entire block can be deleted and the
+          # package removed from requirements.txt.
+
+          # Step 1: Ask PyPI for the sdist download URL (avoids hardcoding a
+          # hash-containing path that could change between releases).
+          GIST_URL=$(python3 -c "import urllib.request,json; d=json.loads(urllib.request.urlopen('https://pypi.org/pypi/sphinxcontrib-gist/json').read()); print([u['url'] for u in d['urls'] if u['packagetype']=='sdist'][0])")
+
+          # Step 2: Download and extract the tarball into /tmp.
+          curl -sL "$GIST_URL" | tar xz -C /tmp
+
+          # Step 3: Find the site-packages directory for this Python install.
+          SITE=$(python3 -c "import site; print(site.getsitepackages()[0])")
+
+          # Step 4: Copy the gist subpackage into the sphinxcontrib namespace.
+          # mkdir -p guards against the edge case where no other sphinxcontrib-*
+          # package has been installed yet (which would mean the directory does
+          # not exist).
+          mkdir -p "$SITE/sphinxcontrib"
+          cp -r /tmp/sphinxcontrib.gist-*/sphinxcontrib/gist "$SITE/sphinxcontrib/"
+
+      - name: Build HTML
+        # Reads RST source from docs/source/ (configured in docs/source/conf.py)
+        # and writes the HTML tree to the repo root (.).
+        # The repo root is where GitHub Pages serves files from on gh-pages.
+        run: sphinx-build -b html docs/source .
+
+      - name: Commit and push built output
+        run: |
+          git config user.email "lgreco@gmail.com"
+          git config user.name "Leo Irakliotis"
+
+          # Stage everything — new/changed HTML, _static/, _images/, etc.
+          # The .gitignore on gh-pages is tuned to exclude source-control files
+          # and the docs/source/ tree so they are not swept into this commit.
+          git add .
+
+          # Only commit if there are actual changes; a no-op build (e.g. a
+          # push that only touched a file excluded by .gitignore) should not
+          # produce an empty commit.
+          if ! git diff --staged --quiet; then
+            # [skip ci] in the message tells GitHub Actions not to re-trigger
+            # this workflow on the auto-commit, preventing an infinite loop.
+            git commit -m "Auto deployment [skip ci]"
+            git push
+          fi
diff --git a/.github/workflows/sphinx.yml- b/.github/workflows/sphinx.yml-
@@ -1,39 +1,39 @@
-#
-# Action to build and publish Leo's Course Documentation Project.
-# This action launces on GitHub, checks out the main brach (immediately
-# after a push), builds the sphinx documents into an html tree,
-# and deploys the html content on the gh-pages.
-# 
-# Leo Irakliotis - lgreco@gmail.com
-#
-
-on: [push]
-jobs:
-    build-and-publish-cdp:
-        runs-on: ubuntu-latest
-        steps:
-            - uses: actions/checkout@v2 # checkout gh-pages branch
-              with:
-                ref: gh-pages
-            - run: git config --global user.email "lgreco@gmail.com"
-            - run: git config --global user.name "Leo Irakliotis"
-            - run: git pull --no-ff
-            - run: git merge origin/main --allow-unrelated-histories
-            - run: pip install sphinx
-            - run: pip install sphinx-rtd-theme
-            - run: pip install sphinxcontrib.gist
-            - run: sphinx-build -b html docs/source . # put everything in current dir; need to parameterize later
-            # - run: cd xyz
-            #- run: git config --global user.email "lgreco@gmail.com"
-            #- run: git config --global user.name "Leo Irakliotis"
-            - run: git pull --no-ff
-            - run: git add .
-            - run: git commit -m "auto build"
-            - run: git push 
-            - run: rm -fr ./*.rst 
-            # Next:
-            # Now that we have a directory with the html build, deploy it on gh-pages.
-#            - run: git branch gh-pages
-#            - run: git symbolic-ref HEAD refs/heads/gh-pages  # auto-switches branches to gh-pages
-#            - run: rm .git/index
-#            - run: git clean -fdx
+#
+# Action to build and publish Leo's Course Documentation Project.
+# This action launces on GitHub, checks out the main brach (immediately
+# after a push), builds the sphinx documents into an html tree,
+# and deploys the html content on the gh-pages.
+# 
+# Leo Irakliotis - lgreco@gmail.com
+#
+
+on: [push]
+jobs:
+    build-and-publish-cdp:
+        runs-on: ubuntu-latest
+        steps:
+            - uses: actions/checkout@v2 # checkout gh-pages branch
+              with:
+                ref: gh-pages
+            - run: git config --global user.email "lgreco@gmail.com"
+            - run: git config --global user.name "Leo Irakliotis"
+            - run: git pull --no-ff
+            - run: git merge origin/main --allow-unrelated-histories
+            - run: pip install sphinx
+            - run: pip install sphinx-rtd-theme
+            - run: pip install sphinxcontrib.gist
+            - run: sphinx-build -b html docs/source . # put everything in current dir; need to parameterize later
+            # - run: cd xyz
+            #- run: git config --global user.email "lgreco@gmail.com"
+            #- run: git config --global user.name "Leo Irakliotis"
+            - run: git pull --no-ff
+            - run: git add .
+            - run: git commit -m "auto build"
+            - run: git push 
+            - run: rm -fr ./*.rst 
+            # Next:
+            # Now that we have a directory with the html build, deploy it on gh-pages.
+#            - run: git branch gh-pages
+#            - run: git symbolic-ref HEAD refs/heads/gh-pages  # auto-switches branches to gh-pages
+#            - run: rm .git/index
+#            - run: git clean -fdx
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,13 @@
+!*.graffle
+.DS_Store
+.buildinfo
+.git/
+.github/
+.travis.yml
+get-current-version.sh
+requirements_local*
+build/
+repo_management_notes.txt
+.DS_Store
+docs/source/.DS_Store
+docs/desktop.ini
diff --git a/.travis.yml b/.travis.yml
diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -0,0 +1,3 @@
+{
+    "esbonio.sphinx.confDir": "."
+}