Flexibility improvements

[HarrisonWilde]

No description provided.

[Copilot]

Pull Request Overview

This PR implements flexibility improvements to the DAIndex framework by adding better access methods for step analysis, configurable decision boundaries, and improved documentation.

• Added new methods to access step sample information, sub-optimal steps, and failed steps for individual groups and all groups
• Introduced configurable decision boundary parameter for DA curve calculations
• Enhanced documentation with better method descriptions and parameter explanations

Reviewed Changes

Copilot reviewed 5 out of 6 changed files in this pull request and generated 1 comment.

Show a summary per file

File	Description
tutorials/meps_tutorial.ipynb	Updated tutorial to demonstrate new API methods and configuration options
pyproject.toml	Version bump from 0.7.3 to 0.8.0
daindex/util.py	Enhanced documentation for area_under_curve function
daindex/main.py	Added new methods for accessing step information and renamed existing methods for consistency
.pre-commit-config.yaml	Reordered pre-commit hooks configuration

Comments suppressed due to low confidence (2)

daindex/main.py:500

• [nitpick] The variable name sub_opt_steps uses an abbreviation. Consider using the full name sub_optimal_steps for consistency with the class attribute naming pattern.

        sub_opt_steps = {s[0]: s[1] for s in ret if s[3]}

daindex/main.py:508

• [nitpick] The variable name sub_opt_list uses an abbreviation. Consider using sub_optimal_list for consistency with the method naming pattern.

        sub_opt_list = ", ".join([f"{s[0]}: {s[1]}" for s in ret if s[3]])

[Copilot]

The documentation update refers to get_group_ratios and get_group_figures as renamed methods, but should clarify that these are the new method names replacing the old ones to avoid confusion.

Suggested change

	The results can be accessed using the `get_group_ratio` and `get_group_figure` methods (with a reference and
	other group), or printed using the `present_results` and `present_all_results` methods.
	The results can be accessed using the `get_group_ratios` and `get_group_figures` methods (with a reference and
	other group). These are the new method names replacing the old `get_group_ratio` and `get_group_figure` methods,
	to ensure consistency. Results can also be printed using the `present_results` and `present_all_results` methods.