Nano Memo

A personal Quarto website for quick reference on Oxford Nanopore sequencing and analysis.~~

Scope

This repository is intended as a personal technical memo site for:

• basic sequencing concepts
• QC interpretation
• alignment tools
• taxonomy tools

Notes

This repository is not affiliated with Oxford Nanopore Technologies.

Internal workflows, decision trees, and sensitive operational notes should be maintained separately in a private repository.

Suggested next pages

• Host depletion strategy (public principles only)
• RBK vs NBK (public-safe version only)
• Bracken
• NanoPlot / pycoQC
• SAM / BAM / PAF
• Read filtering and contamination checks