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5 changes: 5 additions & 0 deletions .vscode/extensions.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
{
"recommendations": [
"Posit.air-vscode"
]
}
11 changes: 11 additions & 0 deletions .vscode/settings.json
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@@ -0,0 +1,11 @@
{
"[r]": {
"editor.formatOnSave": true,
//doesn't work "editor.codeActionsOnSave": {"r.sourceCurrentFile": "always"},
"editor.defaultFormatter": "Posit.air-vscode"
},
"[quarto]": {
"editor.formatOnSave": true,
"editor.defaultFormatter": "quarto.quarto"
}
}
6 changes: 4 additions & 2 deletions README.Rmd
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Expand Up @@ -17,14 +17,16 @@ version <- as.character(packageVersion("isoreader"))
# isoreader <a href='https://isoreader.isoverse.org'><img src='man/figures/isoreader_logo_thumb.png' align="right" height="138.5"/></a>

<!-- badges: start -->
[![Life cycle](https://img.shields.io/badge/lifecycle-superseded-blue.svg)](https://lifecycle.r-lib.org/articles/stages.html)
[![R build status](https://github.com/isoverse/isoreader/workflows/R-CMD-check/badge.svg)](https://github.com/isoverse/isoreader/actions?workflow=R-CMD-check)
[![Documentation](https://img.shields.io/badge/docs-online-green.svg)](https://isoreader.isoverse.org/)
[![DOI](https://joss.theoj.org/papers/10.21105/joss.02878/status.svg)](https://doi.org/10.21105/joss.02878)
<!-- badges: end -->

## About
## This R package is deprecated, please check out isoreader's much faster and more versatile successor at [isoreader2.isoverse.org](https://isoreader2.isoverse.org/)


> Note: although some functionality is still only available in this package, check out isoreader's much faster and more versatile successor at [isoreader2.isoverse.org](https://isoreader2.isoverse.org/)
## About

This package is intended as a unified one-stop command line interface to all common IRMS (isotope ratio mass spectrometry) file formats used in stable isotope geochemistry. It is an extension and highly stream-lined re-implementation of the proof-of-concept [isoread](https://github.com/sebkopf/isoread) package and is designed to fit into a larger framework of IRMS data tools that includes the web-based graphical user interface package [isoviewer](https://github.com/isoverse/isoviewer) and the data processing and visualization pipeline [isoprocessor](https://github.com/isoverse/isoprocessor).

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11 changes: 5 additions & 6 deletions README.md
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Expand Up @@ -5,18 +5,17 @@

<!-- badges: start -->

[![Life
cycle](https://img.shields.io/badge/lifecycle-superseded-blue.svg)](https://lifecycle.r-lib.org/articles/stages.html)
[![R build
status](https://github.com/isoverse/isoreader/workflows/R-CMD-check/badge.svg)](https://github.com/isoverse/isoreader/actions?workflow=R-CMD-check)
[![Documentation](https://img.shields.io/badge/docs-online-green.svg)](https://isoreader.isoverse.org/)
[![DOI](https://joss.theoj.org/papers/10.21105/joss.02878/status.svg)](https://doi.org/10.21105/joss.02878)
<!-- badges: end -->

## About
## This R package is deprecated, please check out isoreader’s much faster and more versatile successor at [isoreader2.isoverse.org](https://isoreader2.isoverse.org/)

> Note: although some functionality is still only available in this
> package, check out isoreader’s much faster and more versatile
> successor at
> [isoreader2.isoverse.org](https://isoreader2.isoverse.org/)
## About

This package is intended as a unified one-stop command line interface to
all common IRMS (isotope ratio mass spectrometry) file formats used in
Expand Down Expand Up @@ -104,7 +103,7 @@ iso_files <- iso_read_scan(data_folder)
#> Info: reading file 'full_scan_example.scn' with '.scn' reader...
#> Info: reading file 'peak_shape_scan_example.scn' with '.scn' reader...
#> Info: reading file 'time_scan_example.scn' with '.scn' reader...
#> Info: finished reading 4 files in 0.34 secs
#> Info: finished reading 4 files in 0.32 secs

iso_files
#> Data from 4 scan iso files:
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1 change: 1 addition & 0 deletions isoreader.Rproj
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@@ -1,4 +1,5 @@
Version: 1.0
ProjectId: 5bc7f522-d4f6-4173-b25d-af1c41905286

RestoreWorkspace: Default
SaveWorkspace: Default
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