This repository holds the code to train a Unet on diffusion + structural data. Specifically it was designed for the segmentation of thalamic nuclei from T1 and DTI volumes.
scripts: your entry points to preprocess/create a dataset; train; and segment a new case.
joint_diffusion_structural_seg: the actual code
Domain-Agnostic Segmentation of Thalamic Nuclei from Joint Structural and Diffusion MRI
H.F.J. Tregidgo, S. Soskic, M.D. Olchanyi, J. Althonayan, B. Billot, C. Maffei, P. Golland, A. Yendiki, D.C. Alexander, M. Bocchetta, J.D. Rohrer & J.E. Iglesias
Medical Image Coimputing and Computer Assisted Intervention - MICCAI (2023)
[ article | arxiv]