The Snakemake workflow in this repository takes as input Seurat scRNA-seq objects, and performs multiple replicates of downsampling and re-clustering, producing output tables that can be used to generate metrics of cell cluster stability. Interactive visualization of Seurat objects and downsampling results can be conducted using scRNAseqWorkflowExplorer.
For information on how to run the test suite, including the optional rule-execution test, see tests/README.md.