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feat(flow-ai): add clip-analysis skill - #8

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mhusbynflow merged 2 commits into
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feat/clip-analysis-skill
Jul 13, 2026
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feat(flow-ai): add clip-analysis skill#8
mhusbynflow merged 2 commits into
mainfrom
feat/clip-analysis-skill

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Summary

Adds a new clip-analysis skill to the flow-ai plugin. It interprets CLIP-Seq pipeline outputs to answer protein–RNA binding questions — where an RNA-binding protein binds, which genes/regions it binds, what motif it recognizes, plus QC, peaks, and signal plots.

It's a companion to flow-ai: flow-ai fetches/runs pipelines, clip-analysis interprets the outputs. The description's Does NOT… boundary keeps the two from competing on routing.

Changes

  • New plugins/flow-ai/skills/clip-analysis/SKILL.md
    • Frontmatter description written in the house Use when… style with concrete biological triggers (CLIP, iCLIP, crosslinking, RBPs, binding motifs, peaks) so it fires on the question, not just explicit skill mentions.
    • Body is the maintainer-supplied analysis rules, verbatim.
  • Bump flow-ai plugin to 0.9.0 for the new skill.

Notes / follow-ups

  • The description gates on CLIP-Seq v1.7 or v1.6 as a trigger signal — a known maintenance point that will need updating when v1.8 lands.
  • No evals/ yet for this skill (unlike flow-ai); can be added later if we want to run the trigger/behaviour test loop.

🤖 Generated with Claude Code

mhusbynflow and others added 2 commits July 13, 2026 18:51
Add a companion skill that interprets CLIP-Seq pipeline outputs to answer
protein-RNA binding questions (binding location, gene/region binding,
motif enrichment, peaks, and signal plots). It consumes the outputs that
flow-ai fetches rather than generating data or running the pipeline itself.

Bump plugin to 0.9.0 for the new skill.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
CI enforces a 1024-character skill description. Tightened the wording
without dropping any trigger keyword or the flow-ai scope boundary
(1079 -> 997 chars).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
@mhusbynflow
mhusbynflow merged commit e256ee8 into main Jul 13, 2026
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@mhusbynflow
mhusbynflow deleted the feat/clip-analysis-skill branch July 13, 2026 17:57
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