ARTR-seq Streamlined Version - #30

Open

hanzhong-bai wants to merge 10 commits into

goodwright:1.3from

hanzhong-bai:ARTR_seq_streamline

Commits on Oct 7, 2024

Snapshot before updating modules.json
hanzhong-bai
committed
b44d220

Commits on Oct 15, 2024

ARTR-seq adaptations
hanzhong-bai
committed
497d249

Commits on Oct 17, 2024

Streamlined bedgraph creation process to reduce intermediate file numbers and sizes
hanzhong-bai
committed
cde12ad
command line debug
hanzhong-bai
committed
c348539

Commits on Oct 24, 2024

added bedtograph functionalities
hanzhong-bai
committed
5fae718
streamlined prep whole read subworkflow, creating bigwig files in the end
hanzhong-bai
committed
2e7f981
Whole pipeline check using subsampled data
hanzhong-bai
committed
9d218c9

Commits on Oct 28, 2024

yeast_MitoV test using HeLa ARTR-seq data
hanzhong-bai
committed
42fc94d

Commits on Nov 1, 2024

Allowed for reusing control sample for peak calling (ip_samples are not allowed for duplicates though)
hanzhong-bai
committed
bf6e95a

Commits on Nov 18, 2024

Update on documentation and sample script for Julian to run
hanzhong-bai
committed
a25dbb7