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Update reheader logic in compression#73

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seppinho merged 2 commits into
genepi:mainfrom
statgen:main
Mar 12, 2026
Merged

Update reheader logic in compression#73
seppinho merged 2 commits into
genepi:mainfrom
statgen:main

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@psnehal

@psnehal psnehal commented Mar 9, 2026

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Replacing annotate with reheader improves the performance.

Comment thread modules/local/compression/compression_encryption_vcf.nf Outdated
return fileList.sort { a, b -> compareFilenames(a, b) }.join(" ")
}

def processFileList(fileList) {

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Duplicate function.

@lukfor lukfor left a comment

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Thank you for your help! I only had two comments.
Best,
Lukas

@psnehal

psnehal commented Mar 11, 2026

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I added the function to read the name of the first chunk and fixed the bug with the print statement.

@psnehal psnehal requested a review from lukfor March 11, 2026 15:59
@seppinho seppinho merged commit 47774d0 into genepi:main Mar 12, 2026
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3 participants